Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2068 ATGAAGTTATGTACTTCTTTGTTGTTTCTCGGTCTGATTTCCTCGGTCTCTGTTGTGACTTGTGATACTGTAGCCTCAAATGAAGTTTGGGCGCTTACTTCCTTTAAAGAGGCTGTCTATGAAGATCCATATCTACTTTTGTCAAATTGGAATACTCTGGATTCAGATCCTTGTGAATGGTTTGGCGTTTCATGCACTATGGCTCGAGATCATATCATTAAGCTAAACATTTCGGGGTCATCTTTAAGGGGATTTCTCGCACCAGAATTGGGACAAATCACCTACTTGCAAGAACTGATTTTGCATGGCAACAATCTGATTGGGATTATACCTAAAGAATTGGGCATGTTGAAATCTCTCAAGGTCTTGGATTTGGGGATGAATCAGTTATCTGGACCAATTCCTCCAGAGATTGGAAATTTAGCACAAGTTGTGAAAATAAATCTGCAGTCCAACGGGTTGACTGGTAGTCTACCTCCAGAGCTTGGAAATTTGAATTACCTTCAAGAACTTCGGGTTGACAGGAATAAGATTCAAGGACCTGTTCCTGCTGGAAGCCAATTTTCTTCCAATATGCATGGAATGTATGCCTCAAATGCAAATTTAATTGGTTTCTGCCGTCTTTCTCAGTTAAAAGTTGCAGATTTTTCATTCAACTTCTTTGTTGGTAGCATACCCAAATGTCTGGAGTATCTACCAAGGTCAAGCTTTCAAGGGAACTGCCTCCAGAGCAAAGAGTTAAAGCAGCGTTCATCTGTGGAATGTGCTGGTGCTTCACCTGCCAAGAGCCGTCCAGTGGTCAGCCCAAAGCACCAACCTGCCAAATACGTGTCCAAGCATCATGGAGCATCAAAACCTGTCTGGCTTTTGGTTCTAGAAATAGTGACAGGAACCATGTTTGGTTCTCTCTTCCTGGTCGGTGTTCTCGCTGCTCTTCAGAGATGTAACAATAAATCATCTATCATTAATCCTTGGAAGAAATCTGCAAGCGAGAAGGACCACATGGCAGTATATATAGACTCTGAGATGCTGAAGGATGTAAGGAGTTATAGCAGACAAGAGCTTGAAGTGGCATGTGAAGACTTCAGCAACATTATTGGGTCCTCACCAGACAGTGTAGTCTACAAGGGCAACATAAAAGGTGGGCCTGAGATTGCTGTAATTTCCCTCTGCGTTAAGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATACAGGAAAACTGCTGGGATATTGTAGAGAGAGCACTCCATTTACAAGGATGCTGGTTTTCGAGTATGCTTCAAATGGGACACTTTATGAGCACCTACATTACGGAGAAGGATGCCAGTTATCATGGACACGGCGTATGAAAATTGTTGTAGGCATTGCACGTGGACTCAAGTACCTACACACAGAAGTTGAGCCTCCATTCACTATATCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGATTTTTCCCCTACGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGGTCAGAAAAGAATTTGGATTCGGTAGGTAGCCAAGGTTCTGTTTGTGTTCTTCCAAAGTCCATAGAGGCACGCCATCTTGATCCTCCAGGAAATGTGTACGCTTTTGGCATAATTCTACTGGAGATAATCAGCGGGAGACCTCCATATTGCAAGGACAAAGGGTCCTTGGTGGATTGGGCCAAGGATTATCTTGAAAAGCCAGAAGTAATGTCATATGTGGTGGATCCCGAATTGAAACATTTTAGATTTGATGACCTCAAAGTAATATGTGAGGTAGTTAGTCTTTGTATCACTCCTGACCCCACCAGGCGTCCATCCATGCAACAACTATGTACTATGCTGGAGAGCAAGATTGACACTTCAACAAGCTTGGAGCTCAAGACATCGTCTCTGGCTTGGGCTGAACTTGCACTTTCGTCATAG 1977 0.4289 MKLCTSLLFLGLISSVSVVTCDTVASNEVWALTSFKEAVYEDPYLLLSNWNTLDSDPCEWFGVSCTMARDHIIKLNISGSSLRGFLAPELGQITYLQELILHGNNLIGIIPKELGMLKSLKVLDLGMNQLSGPIPPEIGNLAQVVKINLQSNGLTGSLPPELGNLNYLQELRVDRNKIQGPVPAGSQFSSNMHGMYASNANLIGFCRLSQLKVADFSFNFFVGSIPKCLEYLPRSSFQGNCLQSKELKQRSSVECAGASPAKSRPVVSPKHQPAKYVSKHHGASKPVWLLVLEIVTGTMFGSLFLVGVLAALQRCNNKSSIINPWKKSASEKDHMAVYIDSEMLKDVRSYSRQELEVACEDFSNIIGSSPDSVVYKGNIKGGPEIAVISLCVKEEHWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEGCQLSWTRRMKIVVGIARGLKYLHTEVEPPFTISELNSSAVYLTEDFSPTLVDFESWKTILERSEKNLDSVGSQGSVCVLPKSIEARHLDPPGNVYAFGIILLEIISGRPPYCKDKGSLVDWAKDYLEKPEVMSYVVDPELKHFRFDDLKVICEVVSLCITPDPTRRPSMQQLCTMLESKIDTSTSLELKTSSLAWAELALSS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2068 658 Gene3D Transferase(Phosphotransferase) domain 1 442 649 - -
Glsi05g2068 658 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2068 658 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Glsi05g2068 658 FunFam Inactive receptor-like serine/threonine-protein kinase 334 441 - -
Glsi05g2068 658 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 25 181 - -
Glsi05g2068 658 Pfam Protein tyrosine and serine/threonine kinase 364 631 IPR001245 GO:0004672|GO:0006468
Glsi05g2068 658 Gene3D Phosphorylase Kinase; domain 1 333 441 - -
Glsi05g2068 658 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Glsi05g2068 658 PANTHER PROTEIN MALE DISCOVERER 2 16 656 - -
Glsi05g2068 658 SUPERFAMILY L domain-like 27 233 - -
Glsi05g2068 658 Gene3D Ribonuclease Inhibitor 140 260 IPR032675 -
Glsi05g2068 658 SUPERFAMILY Protein kinase-like (PK-like) 338 633 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2068 Glsi-ChrGlsi05 67421518 67425696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2068 3 633 Receptor kinase-like Gene Family AT2G01210 27.907 3.66e-58 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Glsi05g2068 PK_Tyr_Ser-Thr 3.5e-19 CL0016