Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2060 ATGTATACTTCAATCGTTTCAGAACGTCGTATAGCACTATCGAAGCTTCTCTGCAACTTCATCTTGGCCCGAAACATGGGCGGGGGTCCTCGCACCTTCCCTGGCGGTGTCAACAAGTGGAAATGGAAGCGCATGCATGAGAAGCGAGCCAGAGATAAAGAGAAAAGGCTTCTCGAACAAGAAAAGCAGCTCTACCAGGCTCGCATTCGCTCCCATATCCGTGCCAAACTTGTGGGGAAACCTGACTCTTCAACTGCCACTCACAGCCCTATGGGCCCGGAGGACCACGTTAAGGCCTTAGCCAATCGTTTTATGAAGGAAGGGGCTGAAGATCTCTGGAACAGAGATGACGGTCCTTTAAAATCTCCGCCTCCGCGTCTCAAAGAATTTCAACGATCGACTCGATCAAGCAAATGCCCAGGATCAATTGGATCGCCGTTGGATCTGAGGAAAATGATACCGGAAGGCCGTCACATAATTTCTAATAGCCAAAACGGCAATTTGACAAATACGAATAGTAATTATTCACAAACTAGGGATTACTCATTGCAAAGTCTAAGGAGGATTCGGAAGAATGAGAGCTCTTCAGACGAGGAGGATTCTAATTATCGTTTGGATAGAAAGCCTGCGAGACCTATTATCAGAAATTCAGTAAGTAATCAGAACAACGTGATTAATACAAATGTGGGTGATTGTATGCACAATAAGAAATATATGCCTAAAAGGCATCGAAAATTTTGGAGAAATGAGAGTTCCTCCGGCGAGAGTGAATCGGACTTGGATTCAGAGGATTTAAGAATTGGCGGGGACGTTAATAAGATAGGTGGTAGTGCTTCTCTGGGGAAGTATGACGTAAAGAGGAAGAGGAGGCTGCTGCCAAAGTCATATGACGAGGAGAGTGATCTTTCGGAGCAGGTTGAATTAATCAGGTATGAACTAAATAAGAGGAAGATGACCGATAGTGAGCAGCAGACAGATGAGGAAGAAACGCTACTTAGCCGGAGAAGATTTGATGAGTGTGGTATATCACCATTGACAATCAAGGCACTTTCTTCAGCTGGTTATATTCACATGACTCGCGTTCAAGAGGCTAGCCTTTCTCTTTGTCTTGAGGGCAAGGATGCTTTGGTGAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCGATGAGTAGAAATTCCACTAAACATGTGCCTCCAATACTTGTTCTTATTCTCTGCCCAACCAGAGAGCTTGCTAGTCAAATTGCTGCTGAATTAAAGGTTTTGCTGAAGTATCATGATAACATTGGGGTGCAGACTCTAGTAGGAGGCATTCGGTTTAAAGATGACCAAAAACGTCTTGAATCAGATCCATCCCAGATAATAGTTGCTACTCCGGGTAGGTTGCTGGATCATATTGAGTATAAGTCTGGAATATCTGTGCGGTTGATGGGCTTACAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGATTTGGGATTTCGAAAGAGTATAGAAAATATTGTTGATTGTTTGCCTCGTCAAAGGCAATCCTTGCTATTTTCTGCAACCATCCCAAAGGAGGTCCGTCGTATATCTCAACTTGTCTTGAAAAGGGAACACGCATATGTTGACACAGTGGGGATGAGTTGTGTGGAAACTCCTGCTAAGGTAAAGCAATCTTATCTTATTGCTTCTCATGAATCGCATTTTCAAATATTGCACCATATTTTGAGGGAGCACATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTGACATCACTCATGTATCAACTTCTTCGAGAAATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAGCTTTATCGAACTCGCATATCAGATGAGTTCAGGGACTCCAAACAACTGATTCTTGTCTCATCTGACGTTTCATCTCGCGGAATGAATTATCCCGATGTTAGTTTAGTCATTCAGGTGGGTATTCCGTCTGACCGAGAACAATATATACATCGTGTTGGAAGAACAGGACGGAAAGGCAAAGAAGGGGAAGGCTTATTGTTGATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATCAAGGATCTCCCTCTCGAGAGATTTCCTTTACCAGATATAGATCCCCAGTCAAAGCTTAAGATAGAGGATTCGATGGCAAAGATTGATAACAACGTCAAAGAATCAGCTTATCATGCTTGGCTTGGTTATTATAACTCGATCAGGGAAATTGGGAGAGATAAGACCACTCTAGCTGAGCTGGCGAGCCAATTTTCAGAATCAATTGGTTTGCAGAGGCCTCCTGCTCTTTTCAGAAAGACTGCACTGAAAATGGGATTGAAAGATATCCCTGGCATCAGAATACGCAGATAG 2415 0.4298 MYTSIVSERRIALSKLLCNFILARNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEQEKQLYQARIRSHIRAKLVGKPDSSTATHSPMGPEDHVKALANRFMKEGAEDLWNRDDGPLKSPPPRLKEFQRSTRSSKCPGSIGSPLDLRKMIPEGRHIISNSQNGNLTNTNSNYSQTRDYSLQSLRRIRKNESSSDEEDSNYRLDRKPARPIIRNSVSNQNNVINTNVGDCMHNKKYMPKRHRKFWRNESSSGESESDLDSEDLRIGGDVNKIGGSASLGKYDVKRKRRLLPKSYDEESDLSEQVELIRYELNKRKMTDSEQQTDEEETLLSRRRFDECGISPLTIKALSSAGYIHMTRVQEASLSLCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMSRNSTKHVPPILVLILCPTRELASQIAAELKVLLKYHDNIGVQTLVGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISVRLMGLQMLVLDEADHLLDLGFRKSIENIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHAYVDTVGMSCVETPAKVKQSYLIASHESHFQILHHILREHILQAPDYKVIVFCITGMVTSLMYQLLREMKMNVREIHSRKPQLYRTRISDEFRDSKQLILVSSDVSSRGMNYPDVSLVIQVGIPSDREQYIHRVGRTGRKGKEGEGLLLIAPWEEYFLDEIKDLPLERFPLPDIDPQSKLKIEDSMAKIDNNVKESAYHAWLGYYNSIREIGRDKTTLAELASQFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2060 804 SMART helicmild6 607 688 IPR001650 -
Glsi05g2060 804 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 366 549 IPR014001 -
Glsi05g2060 804 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 335 363 IPR014014 GO:0003724
Glsi05g2060 804 Gene3D - 312 551 IPR027417 -
Glsi05g2060 804 MobiDBLite consensus disorder prediction 111 210 - -
Glsi05g2060 804 Gene3D - 559 783 IPR027417 -
Glsi05g2060 804 PANTHER RNA HELICASE 301 733 - -
Glsi05g2060 804 MobiDBLite consensus disorder prediction 245 264 - -
Glsi05g2060 804 Pfam DEAD/DEAH box helicase 359 537 IPR011545 GO:0003676|GO:0005524
Glsi05g2060 804 SMART ultradead3 354 567 IPR014001 -
Glsi05g2060 804 CDD SF2_C_DEAD 564 697 - -
Glsi05g2060 804 MobiDBLite consensus disorder prediction 158 183 - -
Glsi05g2060 804 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 583 733 IPR001650 -
Glsi05g2060 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 705 IPR027417 -
Glsi05g2060 804 MobiDBLite consensus disorder prediction 184 210 - -
Glsi05g2060 804 Coils Coil 43 63 - -
Glsi05g2060 804 MobiDBLite consensus disorder prediction 243 264 - -
Glsi05g2060 804 Pfam Helicase conserved C-terminal domain 582 688 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2060 Glsi-ChrGlsi05 67366674 67371649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2060 337 713 Eukaryotic Initiation Factors Gene Family AT3G19760 28.354 3.62e-44 163