Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2052 ATGGCGCCATTACCGGTGGAGCAGACTGCTGAATCAGCACCAACTGACTCGCAGAGATCTATTCCGACACCGTTTCTAACGAAAACCTTCCAACTTGTGGATGATCCCTCTGTGGATGACCTAATTTCATGGAACGAAGATGGAACAAGTTTCATAGTTTGGCGACCAGCTGAATTCGCTCGAGATTTGCTTCCCAAGTATTTCAAACACAACAACTTCTCCAGTTTCGTCCGCCAACTTAACACCTATGGATTTCGGAAAGTTGTCCCAGATCGTTGGGAATTCGCTAATGACTGTTTCCGGCGAGGCGAGAGAAGCTTGCTTCGAGACATACAACGGCGGAAAATATCGCCGTCCACGGCCGCCGTAGCTGCAACAGCCAATACAGTGACGGTGGCTGCAGTACATGCCGTCGCCAGAGCGGTGTCTCCAAGCAACTCCGGCGACGAACAGGTAATCTCTTCTAACTCATCTCCAATTGCTGCGCATAATACAATGCACCGCACCACAAGTTGCACCACGGCGCCTGAGCTCGTAGAAGAGAATGAAAAGCTTAGGAAAGAGAACATGCAATTGAGTCAGGAATTGAGTCAATTGAAGGGGCTGTGTAATAACATACTGGCATTGATGACCAATTACGCTTCGAGCCAATTAGAGTCTTCTCCTAGTGTTCCCGAAGGAAATCCGTTGGAGCTTTTACCTGCGATGCAACTTTCGGCTGAGGAAGCCGTCGTGGGGAATGGCGCTACCTGTGAGACGAAATCAGCAGAGGTGGAGGTGCCCAAGTTGTTTGGGGTTTCTATTGGGGTTAAACGATGTAGGACTTCGGATGGAGAGGAAGCCGAGAAAGAAGAACTAAATCAAACACAGTCCTCCCAGGAGCCCGATGGTGGCTCCGATGTGAAAACAGAGCCGCTAGATGGCAGCAACTCGGATGATCAGGAGACACCCTGGTTAGAGCTTGGGAAATAA 972 0.4979 MAPLPVEQTAESAPTDSQRSIPTPFLTKTFQLVDDPSVDDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERSLLRDIQRRKISPSTAAVAATANTVTVAAVHAVARAVSPSNSGDEQVISSNSSPIAAHNTMHRTTSCTTAPELVEENEKLRKENMQLSQELSQLKGLCNNILALMTNYASSQLESSPSVPEGNPLELLPAMQLSAEEAVVGNGATCETKSAEVEVPKLFGVSIGVKRCRTSDGEEAEKEELNQTQSSQEPDGGSDVKTEPLDGSNSDDQETPWLELGK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2052 323 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g2052 323 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g2052 323 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g2052 323 Coils Coil 175 202 - -
Glsi05g2052 323 MobiDBLite consensus disorder prediction 274 289 - -
Glsi05g2052 323 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 282 IPR027725 -
Glsi05g2052 323 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g2052 323 MobiDBLite consensus disorder prediction 1 22 - -
Glsi05g2052 323 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g2052 323 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g2052 323 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Glsi05g2052 323 MobiDBLite consensus disorder prediction 274 323 - -
Glsi05g2052 323 Gene3D - 17 115 IPR036388 -
Glsi05g2052 323 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2052 Glsi-ChrGlsi05 67333086 67334142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2052 16 323 HSF AT4G11660 57.704 6.06e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi05g2052 HSF_DNA-bind 2.1e-32 CL0123