Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2048 ATGGCCACCACTAGGTCACCGAATCCTTCCTCCGATGACATAGTTGATACGACTCCCTTCTTAGCGAATTCAAGTGGCTCTTCCGATGAATTCAACTCCGGCCGTCGATTTGTTCGGAGGCAGAGCCTTCGCCAAGCCGCACGGTTCCTGAGGCAGGCCAGTAACCGTAGGATCATGCGCGAGCCATCGATGCTGGTCAGAGAGACTGCAGCCGAGCAGTTGGAAGAGAGACAGGGCGATTGGGCTTATTCCAAACCCGTTGTGATTCTTGATATTATTTGGAACTTTGTCTTTGTTGTCGTGGCAGCTACAGTTTTGGTTTTGAGTCAAAGTGAAACGCCGAGCACGCCTTTGAGATTGTGGATTGTGGGTTATGCTCTTCAATGCATCCTTCACATGGTCTGTGTTTGCGTTGAGTATAGGAGACGGAGGCGATACCGGCGCGGTCAGTTTTCGCCATCCTTGGACGCAGTGCAAGGAAGGATTGGCAGCAGTGGCAATTTGAGTTTGGGTTCAAGGGAGGGTTCTGGCCAGTATGTGACATTGGCACAATTCGACGACGAGGGTACAAGTGTAGCGAAGCATCTGGAATCAGCGAATACAATGTTTTCATTCATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAAGCTTTAGCCCATGATTCTCCTCAGCTTTACTGGCTATGTATAATTTTCTTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCATGCATCATTGGTATTGCTGTATGCTGTTGTCTTCCATGTATCATCGCACTTCTATATGCAGTTGCTGACCAGGAAGGTGCGTCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAATTTCGAAGAATTGACAATACTGAAAAACTTGATGGTAATACACAAGGACCTATTGGTGGAATAATGACTGAATGCGGCACTGGTTCTTTGATTGAACACGTTCTTTCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCAACTTATGATGACGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTATATCAATGCCACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGTAGCAACCAGAGTCAAGAGGTTGTGTAG 1164 0.4656 MATTRSPNPSSDDIVDTTPFLANSSGSSDEFNSGRRFVRRQSLRQAARFLRQASNRRIMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVVAATVLVLSQSETPSTPLRLWIVGYALQCILHMVCVCVEYRRRRRYRRGQFSPSLDAVQGRIGSSGNLSLGSREGSGQYVTLAQFDDEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAHDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIDNTEKLDGNTQGPIGGIMTECGTGSLIEHVLSEEDAECCICLSTYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNQSQEVV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2048 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Glsi05g2048 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 387 IPR013083 -
Glsi05g2048 387 Pfam Ring finger domain 331 373 IPR001841 -
Glsi05g2048 387 SUPERFAMILY RING/U-box 321 379 - -
Glsi05g2048 387 PANTHER TARGET OF ERK KINASE MPK-1 54 378 - -
Glsi05g2048 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Glsi05g2048 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2048 Glsi-ChrGlsi05 67314380 67319568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2048 1 382 C3H Transcription Factor Family AT1G68070 47.013 2.52e-116 340