Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2023 ATGGCGTCGTCTTCCCCTAAAGACGAGCAGAGGGATCAGGAGCAGCAGCAGCAGGAAGCAGTGAAAGAGTGCATACACAAAACCAAAACGATTCAGTTCCTCGGACGCACCACGCCCATCGTTCTTCAAAATGACAATGGCCCCTGCCCTCTCCTCGCTATCTGTAATGTTCTTCTGCTAAGGAACAACTTAAATTTGAGTCCAGATATTGCTGAAGTCTCACAGGAGAAATTGCTTTCACTGGTTGCTGAACGGTTGATTGATTCCAATAGTAATGTGAATAACAAAGATGCAGGCTATGTCGAAAATCAACAACAGAATATTTCTGATGCAATTGATTTGCTCCCAAGACTTGCTACTGGCATTGATGTAAATATAAAATTCAGGAGAATAGATGATTTTGAGTTCACTCCAGAATGTGCCATATTTGATCTGCTGGACATCCCTTTGTATCATGGCTGGATAGTTGATTCTCAGGATTATGATACTGGTAATGCCATAGGATCAAAGTCCTATAATGCTCTTATGGGGGAGCTTGTTGCTCTTGAAACAAGAAACACAGAAGTTCAGCATAAAAATAGTCCTGAAGAAGATTGCGTTGATTTTGTGGCTGCAACAACTGCAACTCTTGGAGTTCCTTCTCCAAGTCTTTCAAAGGCCAGGTCCTTTGATGGTTCTCCACATTCTGTTTCTGATGAACAAATGCTAAGGAAAGGGGATCTTGAAGAAGAGGCAGAGCTTTTGAGAGTTCTGAAGCTATCTCAGGCTGATTCAAAAACATCAGCAAGTGATCCCATTGTAGGTCATGTAGATGGAGGGACTATGTCTGTCAGTATGGATGAAAATACATGTAACAAGGAGGTTATTGCTGTAGATTCTGGAGATAAGTTAGAAAAGAGAACCGATGCTGAAAACAATGACTTTCATGAGCCAGAACCCTACATAATAGATGATTGTACTGCTTCTGGTAATGACAGTAATGAGCAGATGTCTTCTCAATCTACACTGGGGGAAACAGCTAATTTATCTTTAAAGATCGATGGGGGAAATAATCTCGATCAATTAACTTACATGGGACCTGAAGAACCAATTGTTCAGAATAAGAACAATCTTTGTACATTGGTTCAGAATGAAAGTGCAACTCTTTCTCCAGGAAAAGATCGTGTGTCTTTGATTGAGAGACATACAGATGTCTTAGACGGGGATGCAAAAGTTCACAGTCAATCCACTCTTATAACTAATGATTATGGATGTGCAGATGAATCTCATGAACATGATGCTACAGGATTATCACGCTTACCTGTAACTGATAAAAATTCAGAACTATCTAGTGGCAGATTTCAGCAAACTGATACCTCTGGAGCATTGTCTTCAAGTGTCAATGGGAGTGAGCCCATATATGAAGGAGAGGAATGTGTATTGGATACCAGAACTGCAACTTTTCAGGATCATGAACCTGTCTATGAAGGTGAGGTGGTGCTTGCAGAACAGGCTGACAAAATCACATTGACAACCTCTGATGTAAGAGCCAAGGATGAAATTACACCACAACAAGGGGAATTAGTCAGGAGTTTCTTGAAGAATAATGCCAGTCAGTTGACATTTTATGGCCTTTTCTGTTTACAAGATGGTCTTAAAGAACGTGAGTTATGTGTTTTTTTCCGTAACAATCATTTCAGTACCATGTTTAAGTTTGAGGGTGAGCTTTATCTTCTAGCTACAGACCAAGGATACATAAATCAGCCTGATTTGGTGTGGGAAAAACTGAATGAGGTAAATGGTGATACATTGTTTATGACTGGTAGCTTCAAGGAATTCAAGGTAGAAAGCCATGAAAGTAACACCTGGGATGAGCGTAATGCTATGACCAGCACTGCTGACTATCTTGCCAGCATAGATAGTGCAGCACAGGCAGGCTTAGACGTGAATTCTGATCTGCAATTAGCAATAGCATTGCAACAACAAGAGTTTGAGCAGCCGCCACCACGTCCTAGTTCACAGACACCATCCATTAGTGGTAGTTCCAGATTGGTCACTGGTCCTCAGGTGTCGAGACACAGTGGAAGGCAATCATCTTCATCTTCCAAGCCTGAAGGGAAATCCAAAGAGAAATGTACAATGATGACTACGCCTTGTAAATACAATGAAGAATACGAAGATGGAATAAAACAAGTAGGATCCGACGGGGCACCGACAGTGAAGCAAAGCATTATGAAGTTGAATTCTGCAATTTTCGTAGAGCAGAAAGTTTTCTGTCTCAGATCCCTATATGCAATTACTCACCAAAAACGATACAACTGTCTGCTTCTCCCTCCTCCCCTCTTGGCAAACGCGTGCGATCTCCCACCAAAGTCCCCTCTCAAATTCGTAAGGACCTGCCTTAGAGTGGTCCTCACCCCTCATCCTCAGAAGGAAATGCAAGAACCAAACTTGGGAATGATGGCTGGTGCTTTAACCGGAGAAGTGTCAGCTTCCGGCGACCACCACCGACAACTGAAGGCAGAGATAGCCACTCACCCACTGTATGAGCGGCTTCTGGCTGCCCATGTGGGCTGCCTCCGCGTCGCCACTCCGATCGATCAGCTGCCACTCATCGATTCCCAGTTAACTCAGTCCCACCATATTCTACGCTCCTATGCCTCGCACCAAACCCATTCCCTTTCACCTCATGAGCGTCAAGAGCTTGACAACTTCCTGGCACAATATTTGATAATCTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAAGCTGTCGTGGCCTGCCGTGATATTGAAAACACCTTACAAGCTCTCACAGGTGTAAGTTTGGGTGAAGGAACTGGTGCAACAATGTCGGACGATGAAGATGATCTGCAAATGGATTTCTCTTTGGATCAATCTGGTGCTGAAGGGCACGACATTATGGGATTTGGTCCATTACTTCCTACGGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTGAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAACGAAGAGCTGGGAAACTACCAGGTGACACAACTTCGGTGTTGAAGAACTGGTGGCAGCAACACTCAAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCAGCCACCACTTTAAAGTCGAAGCGCAAGAGGTAG 3282 0.4354 MASSSPKDEQRDQEQQQQEAVKECIHKTKTIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNNLNLSPDIAEVSQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNISDAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDSQDYDTGNAIGSKSYNALMGELVALETRNTEVQHKNSPEEDCVDFVAATTATLGVPSPSLSKARSFDGSPHSVSDEQMLRKGDLEEEAELLRVLKLSQADSKTSASDPIVGHVDGGTMSVSMDENTCNKEVIAVDSGDKLEKRTDAENNDFHEPEPYIIDDCTASGNDSNEQMSSQSTLGETANLSLKIDGGNNLDQLTYMGPEEPIVQNKNNLCTLVQNESATLSPGKDRVSLIERHTDVLDGDAKVHSQSTLITNDYGCADESHEHDATGLSRLPVTDKNSELSSGRFQQTDTSGALSSSVNGSEPIYEGEECVLDTRTATFQDHEPVYEGEVVLAEQADKITLTTSDVRAKDEITPQQGELVRSFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGSFKEFKVESHESNTWDERNAMTSTADYLASIDSAAQAGLDVNSDLQLAIALQQQEFEQPPPRPSSQTPSISGSSRLVTGPQVSRHSGRQSSSSSKPEGKSKEKCTMMTTPCKYNEEYEDGIKQVGSDGAPTVKQSIMKLNSAIFVEQKVFCLRSLYAITHQKRYNCLLLPPPLLANACDLPPKSPLKFVRTCLRVVLTPHPQKEMQEPNLGMMAGALTGEVSASGDHHRQLKAEIATHPLYERLLAAHVGCLRVATPIDQLPLIDSQLTQSHHILRSYASHQTHSLSPHERQELDNFLAQYLIILCTFKEQLQQHVRVHAVEAVVACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSGAEGHDIMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSATTLKSKRKR 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2023 1093 Coils Coil 1092 1093 - -
Glsi05g2023 1093 Pfam MINDY deubiquitinase 55 179 IPR033979 GO:0004843|GO:1990380
Glsi05g2023 1093 SMART HOX_1 1018 1083 IPR001356 GO:0003677
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 433 462 - -
Glsi05g2023 1093 CDD homeodomain 1019 1080 IPR001356 GO:0003677
Glsi05g2023 1093 Pfam KNOX2 domain 888 939 IPR005541 GO:0003677|GO:0005634
Glsi05g2023 1093 SMART KNOX2_2 885 940 IPR005541 GO:0003677|GO:0005634
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 668 695 - -
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 1 21 - -
Glsi05g2023 1093 ProSiteProfiles 'Homeobox' domain profile. 1016 1079 IPR001356 GO:0003677
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 7 21 - -
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 216 237 - -
Glsi05g2023 1093 Gene3D - 1015 1090 - -
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 423 462 - -
Glsi05g2023 1093 FunFam homeobox protein knotted-1-like 3 isoform X1 1017 1078 - -
Glsi05g2023 1093 SUPERFAMILY Homeodomain-like 1018 1082 IPR009057 -
Glsi05g2023 1093 ProSiteProfiles ELK domain profile. 996 1016 IPR005539 GO:0003677
Glsi05g2023 1093 MobiDBLite consensus disorder prediction 656 706 - -
Glsi05g2023 1093 Pfam KNOX1 domain 832 873 IPR005540 GO:0003677|GO:0005634
Glsi05g2023 1093 Pfam Homeobox KN domain 1036 1075 IPR008422 GO:0003677|GO:0006355
Glsi05g2023 1093 SMART KNOX1_2 830 874 IPR005540 GO:0003677|GO:0005634
Glsi05g2023 1093 PANTHER NF-E2 INDUCIBLE PROTEIN 6 705 IPR007518 GO:0004843|GO:1990380
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2023 Glsi-ChrGlsi05 67129606 67144294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2023 806 1092 Homeobox Transcription Factor Family AT1G62990 77.055 3.51e-160 474