Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2020 ATGCGATCTCAACTGTTATTGTGTGCTACTACTGTCATATTTGTAACTTTCAGAGTAGACGGGCTTTGTATAGCATATAAATTAGAGATGATGAGTCTCCAGGCTGCTTTACCTCAACCGAAAGTAAAATTTTAAAACCTACAGCTAGCAAACTTAACCATGGCTTCTATTAATCCATTTTGTAGCTTTAGTAGCATCTTATTGATTACATGGATGTTCACAATCATCGGAAAACCAGCGGCATCTGCGGGAGTATTTCAACCCAGCCAATGGGCTCTTGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCTTGGGAGGAGCATGTGGGTACGGAAATTTGTTTCTGAATGGTTATGGGACAGATACAGTGGCTCTGAGCTCCACATTGTTCAACAATGGGTATGCCTGCGGGACTTGTTACCACATAAAATGCTACCAATCTAGTGCATGCTATAAGAATGTGCCGTTCATCACAGTGACAGCCACCAATCTTTGCCCTCCTAATTGGGCACAAGCCTCTGACAATGGGGGCTGGTGCAACCCACCCCGCGCTCATTTTGACATGTCCAAGCCTGCCTTCATGAAAATTGCCGACTGGAAGTCTGGCATCGTCCCCGTTATGTATCGCAGAGTACCATGCATGAGGAGTGGGGGGATTCGATTCTCTTTCCAAGGAAATGGGTACTGGCTATTGGTGTACGTGATGAACGTGGGAGGTGGAGGAGATATTACGGGCATGTGGGTGAAAGGAAGCAGAACAGGATGGATTAGCATGAGCCACAACTGGGGGGCTTCATACCAGGCATTTGCAACTCTGGGTGGTCAATCTCTTTCTTTCAAGATAACTTCATACACAACCAGGGACACTATTATAGCATGGAATGTTGCTCCTGCCAACTGGGGCGTAGGAGTAACTTATTCTACCGATGTCAACTTCCACTGA 954 0.4612 MRSQLLLCATTVIFVTFRVDGLCIAYKLEMMSLQAALPQPKVKFXNLQLANLTMASINPFCSFSSILLITWMFTIIGKPAASAGVFQPSQWALAHATFYGDETASATLGGACGYGNLFLNGYGTDTVALSSTLFNNGYACGTCYHIKCYQSSACYKNVPFITVTATNLCPPNWAQASDNGGWCNPPRAHFDMSKPAFMKIADWKSGIVPVMYRRVPCMRSGGIRFSFQGNGYWLLVYVMNVGGGGDITGMWVKGSRTGWISMSHNWGASYQAFATLGGQSLSFKITSYTTRDTIIAWNVAPANWGVGVTYSTDVNFH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2020 317 SUPERFAMILY Barwin-like endoglucanases 90 240 IPR036908 -
Glsi05g2020 317 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 232 312 IPR007117 -
Glsi05g2020 317 SUPERFAMILY PHL pollen allergen 219 311 IPR036749 -
Glsi05g2020 317 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 109 222 IPR007112 -
Glsi05g2020 317 PRINTS Expansin signature 161 171 IPR002963 GO:0009664
Glsi05g2020 317 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Glsi05g2020 317 PRINTS Expansin signature 121 135 IPR002963 GO:0009664
Glsi05g2020 317 PRINTS Expansin signature 180 197 IPR002963 GO:0009664
Glsi05g2020 317 PRINTS Expansin signature 221 233 IPR002963 GO:0009664
Glsi05g2020 317 PRINTS Expansin signature 268 289 IPR002963 GO:0009664
Glsi05g2020 317 PRINTS Expansin signature 197 210 IPR002963 GO:0009664
Glsi05g2020 317 Pfam Expansin C-terminal domain 223 301 IPR007117 -
Glsi05g2020 317 Gene3D - 222 317 IPR036749 -
Glsi05g2020 317 PRINTS Expansin/Lol pI family signature 90 105 IPR007118 GO:0005576
Glsi05g2020 317 PRINTS Expansin/Lol pI family signature 205 221 IPR007118 GO:0005576
Glsi05g2020 317 PRINTS Expansin/Lol pI family signature 298 312 IPR007118 GO:0005576
Glsi05g2020 317 PRINTS Expansin/Lol pI family signature 130 148 IPR007118 GO:0005576
Glsi05g2020 317 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Glsi05g2020 317 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Glsi05g2020 317 Gene3D - 76 217 IPR036908 -
Glsi05g2020 317 SMART dpbb_1 126 212 IPR007112 -
Glsi05g2020 317 Pfam Lytic transglycolase 126 212 IPR009009 -
Glsi05g2020 317 PANTHER EXPANSIN-A15 68 312 IPR002963 GO:0009664
Glsi05g2020 317 CDD DPBB_EXPA_N 90 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2020 Glsi-ChrGlsi05 67104183 67105946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2020 60 317 Expansin Gene Family AT1G12560 65.504 5.60e-122 349