Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2000 ATGAGAAGGCATCGTCAATTTCATCTCTCTCATGCTCTGCTGTGCTCTATTCTTTGTTTTGTTTCGTCTATCACAGTCTCACCAGCAACTGAAAAGGAGATTTTGCTTCAATTTAAGGGTAATATTACAGATGATCCACGCAGCAGCTTGAGTTCATGGGTTTTAAGTGGAAACCCTTGTGAAGATTATAGGGGAGTTTCCTGTAACTCGGAAGGGTTTGTAGAAAGAATCGTCCTATGGAACACTAGTTTGGCCGGAGTACTGTCGCCATCTCTGTCGGGACTGAAATTTTTGAGGATTTTGACACTGTTCGGGAATCGTTTTTCGGGTAATATTCCCGAAGATTATGCTGACATTCACTCGTTGTGGAAGATCAATTTGAGCACCAATGCGTTATCTGGTTCAATCCCAGAGTTCATAGGTGATTTACCGAGCATCCGCTTTCTAGATTTGTCAAAGAATGGCTTCGCTGGGGAGATACCATCTGCTTTGTTTAGGTACTGTTACAAAACCAAGTTCGTTTCTCTTTCTCATAACAATCTTTTAGGTTCAATTCCTGCGTCATTGGTGAATTGCTCGAACCTCGAAGGGTTTGATTTTTCTTTTAATAATCTAAGTGGGGGCATTCCTTCTGGACTTTGTGATATTCCGAGGTTATCCTATATGTCCTTGAGAAGCAATGCCTTATCAGGAATAGTGCAAAAGCAGATTTTGGCATGCCAAGGTTTGACAATTTTAGATCTTGGTAGTAATACATTCACTGGTTTGGCCCCATTCAACATCCTCGAAATGAAAAATCTTACTTATTTCAATGTATCGTATAACGGCTTTACTGGACAAATTCCTGAGATGACTACCTGTAGTGAGAGATTAGAAATTTTTGATGCTTCAGGGAATGATTTGGATGGGGAGATTCCCTCAAGCATAACAAGATGCAAGAAACTCAAGTTATTGGCCTTGGAGTTAAACAGGCTGAAAGGGAGTATCCCAGCAGGGATTCAGGATTTGGGAAGGCTACTAGTTATTAAATTGGGTGATAATTCAATCGGTGGGGCAATTCCGAAGGGGTTTGGCAACATTGAGCTGCTTGAAGTTCTGGATTTGCACAATCTACACCTCACTGGTGAAATTCCAGATGATATAAGCAATTGTAAATTCCTTCTTGAACTGGATGTTTCTGGCAATAACTTAGAAGGGGAGATTCCTCAGAACCTTTACAACTTAACAAACCTGGAATTCCTTGACCTACATCAAAACCAGCTCAATGGAAGCATCCCACCGAGCCTAGGAAACGTGTCAAGGATTCAATACCTAGATTTGTCGCATAATTTGCTTTCTGGTTCAATCCCCTCTTCCCTCGGAAATTTGAAAAACTTGACACATTTTAACCTCTCATTTAACAATCTCTCTGGTGTTATTCCACCTATTGCAACCATACAGGGTTTTGGTTCATCTGCATTTTCCAACAATCCTTTTCTCTGTGGTGCTCCTTTGGACACCACTTGCTCAGTAAATGGCACTAGACCACCGTCAGCTTCTGGGAAGACTAAAGTGCTAAGTGTCTCTGCAATTGTTGCAATTGTTGCTGCAGCAATAATTCTTACTGGGGTTTGTTTGGTGAGCATCATGAATATTAAGGCACGTAGTAGAAAAACAGATGAACATATGATTGTTGAGAGCACACCTATTGGATCTACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAGTATGAAGACTGGGAAGCAGGTACCAAAGCGTTGCTTGACAAAGAGTCTTTGATAGGCCGTGGATCGATTGGAACAGTTTACAGAACTGATTTTGAAGGTGGGATCTCAATTGCAGTGAAAAAGCTCGAGACATTGGGAAGAATCAGAAACCAGGATGAATTTGAGCATGAAATTGGGCGAATAGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTATTATTGGTCCTCGACAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGTAATCTGTATGATAATCTACATGGGTTTGGCTATCCTGGAACCAGCACTAGTAGCGGCAATAGGGAATTATATTGGTCTAGAAGGTTTCAAATTGCGCTTGGAACAGCAAGAGCCCTTGCCTACCTTCACCATGACTGTCGACCTCCAATTCTTCATCTCAACATTAAGTCCTCCAACATACTCTTAGATGAGAAGTATGAGGCAAAGTTGTCTGATTATGGGTTAGGCAAGTTACTTCCCATTTTGGACAATTACGGTCTGACCAAATTCCACAATGCCGTTGGGTATGTTGCACCGGAGTTGGCTCAGAGTTTGAGACAGAGTGAAAAATGTGATGTCTATAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACTGGGAGGAAGCCTGTAGAAAGTCCAACAGCAAATGAGGTGGTTGTTTTGTGTGAATATGTAAGAGGTTTGTTGGAGATTGGCTCAGCTTCAGACTGCTTTGATACAAGGTTGCTGGGTTTTGCGGAAAACGAGTTAATTCAGGTTATGAGATTGGGGCTTATTTGTACTTCTGAGGATCCTTCGAGGCGACCCAGTATGGCTGAGGTTGTCCAAGTTCTTGAGTCAATCAGAAACGGACCGGAATCACATTGA 2658 0.4153 MRRHRQFHLSHALLCSILCFVSSITVSPATEKEILLQFKGNITDDPRSSLSSWVLSGNPCEDYRGVSCNSEGFVERIVLWNTSLAGVLSPSLSGLKFLRILTLFGNRFSGNIPEDYADIHSLWKINLSTNALSGSIPEFIGDLPSIRFLDLSKNGFAGEIPSALFRYCYKTKFVSLSHNNLLGSIPASLVNCSNLEGFDFSFNNLSGGIPSGLCDIPRLSYMSLRSNALSGIVQKQILACQGLTILDLGSNTFTGLAPFNILEMKNLTYFNVSYNGFTGQIPEMTTCSERLEIFDASGNDLDGEIPSSITRCKKLKLLALELNRLKGSIPAGIQDLGRLLVIKLGDNSIGGAIPKGFGNIELLEVLDLHNLHLTGEIPDDISNCKFLLELDVSGNNLEGEIPQNLYNLTNLEFLDLHQNQLNGSIPPSLGNVSRIQYLDLSHNLLSGSIPSSLGNLKNLTHFNLSFNNLSGVIPPIATIQGFGSSAFSNNPFLCGAPLDTTCSVNGTRPPSASGKTKVLSVSAIVAIVAAAIILTGVCLVSIMNIKARSRKTDEHMIVESTPIGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGRGSIGTVYRTDFEGGISIAVKKLETLGRIRNQDEFEHEIGRIGNLQHPNLVAFQGYYWSSTMQLILSEFVPNGNLYDNLHGFGYPGTSTSSGNRELYWSRRFQIALGTARALAYLHHDCRPPILHLNIKSSNILLDEKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSLRQSEKCDVYSFGVILLELVTGRKPVESPTANEVVVLCEYVRGLLEIGSASDCFDTRLLGFAENELIQVMRLGLICTSEDPSRRPSMAEVVQVLESIRNGPESH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2000 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2000 885 SUPERFAMILY L domain-like 49 210 - -
Glsi05g2000 885 Gene3D Ribonuclease Inhibitor 217 508 IPR032675 -
Glsi05g2000 885 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 673 - -
Glsi05g2000 885 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Glsi05g2000 885 Pfam Leucine Rich Repeat 435 456 IPR001611 GO:0005515
Glsi05g2000 885 Gene3D Transferase(Phosphotransferase) domain 1 674 884 - -
Glsi05g2000 885 Gene3D Phosphorylase Kinase; domain 1 566 673 - -
Glsi05g2000 885 PANTHER OS05G0588300 PROTEIN 212 334 - -
Glsi05g2000 885 CDD STKc_IRAK 603 878 - -
Glsi05g2000 885 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 28 167 - -
Glsi05g2000 885 SMART LRR_typ_2 143 167 IPR003591 -
Glsi05g2000 885 SMART LRR_typ_2 408 432 IPR003591 -
Glsi05g2000 885 SMART LRR_typ_2 456 481 IPR003591 -
Glsi05g2000 885 ProSiteProfiles Protein kinase domain profile. 597 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2000 885 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 674 884 - -
Glsi05g2000 885 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 168 505 - -
Glsi05g2000 885 Gene3D Ribonuclease Inhibitor 30 143 IPR032675 -
Glsi05g2000 885 Gene3D Ribonuclease Inhibitor 144 216 IPR032675 -
Glsi05g2000 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Glsi05g2000 885 SUPERFAMILY L domain-like 166 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2000 Glsi-ChrGlsi05 67004919 67007665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2000 7 884 Receptor kinase-like Gene Family AT1G62950 65.733 0.0 1140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Glsi05g2000 Pkinase 1.7e-35 CL0016