Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1994 ATGAGTTCTGAACAGAACGATACTACAAGTTTCCAGCCCTCCGAGCCGAAGCCATGCGCCAACAACTGTGGCTTCTTCGGCACCGCTGGCACCATGAATCTTTGCTCTAAATGTTACAGAGACTTACAAATCAATGAGGAGCAGGCCGCTTCGGCTAAGGTTGCCATGGAAAAATCCCTCAACCCCACATCCCTACCCTTGCCTCATCAGACGTTGGAATCGGCTGTTACAGCCGAGCCCTTTTTCGGAACCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTCTCTTCCCAATCGTCGTCCATGGATTTCGGTGCTGGGCAAGGGCAGCCAAAGGCGGTGAACCGGTGTTGGAGTTGTAACAAGAAGGTAGGCTTGACCGGATTCAATTGCAAGTGCGGGAGTATTTTCTGCGGGACACATCGTTATCCGGAGAAGCACGAATGTACATACGATTTCAAGGCCGTTGGCCGTGATGCTATTGCCAAGGCTAATCCTGTGGTAAAAGCCGACAAATTGGACAGGAAGAGTGGGTTTGCATCCAGGGAGGCCCGTGGCGGGGGAGCACACCCGTCCCGCTTGACTTTACGTACTGTTATCAAAATCAGATCAGGTTGGCCAGGAGTCTTGGATCAAGGGGAGGTTGCCCATAGGAGCTTCCTCCCCTGA 666 0.53 MSSEQNDTTSFQPSEPKPCANNCGFFGTAGTMNLCSKCYRDLQINEEQAASAKVAMEKSLNPTSLPLPHQTLESAVTAEPFFGTSSSSSSSFSFSSQSSSMDFGAGQGQPKAVNRCWSCNKKVGLTGFNCKCGSIFCGTHRYPEKHECTYDFKAVGRDAIAKANPVVKADKLDRKSGFASREARGGGAHPSRLTLRTVIKIRSGWPGVLDQGEVAHRSFLP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1994 221 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Glsi05g1994 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 64 - -
Glsi05g1994 221 SMART AN1_Zf_4 116 153 IPR000058 GO:0008270
Glsi05g1994 221 FunFam Zinc finger AN1-type containing 6 90 171 - -
Glsi05g1994 221 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Glsi05g1994 221 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Glsi05g1994 221 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 174 - -
Glsi05g1994 221 Pfam AN1-like Zinc finger 116 152 IPR000058 GO:0008270
Glsi05g1994 221 Gene3D - 1 63 - -
Glsi05g1994 221 SUPERFAMILY AN1-like Zinc finger 108 170 IPR035896 -
Glsi05g1994 221 Gene3D - 85 171 IPR035896 -
Glsi05g1994 221 ProSiteProfiles Zinc finger AN1-type profile. 110 156 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1994 Glsi-ChrGlsi05 66984953 66987485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1994 13 174 C2H2 Transcription Factor Family AT3G52800 42.331 7.92e-36 122