Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1988 ATGATGAGGCAGATGCTAAACCTTTTGATTTCTGGGGAGCCATTTCAACAGCAAAGAGTTTTAAATATGGAGGCCAGAGATGGAGTCAGTAGTGCGGTTACGGTGGTGGGATCAGATGCTCCATCGGACTATCATGTAGCTCCGAGGACTGAAAACCCAGCAACGACTGGTGGATCAACAACACCGACACCTCCGCCGGCGCCGTCAACCCAAGGCAGTGTTCCTCCGCCGCAGACGGCAGCGTTGGCAACACCGCCGGCAGGCATGACGATGCCGGTGAAGAAGAAGAGGGGTCGACCAAGAAAGTACGGACCAGACGGGTCGGTGACCATGGCGCTATCTCCCAAGCCGATATCATCTTCAGCTCCCCCGCATGTCATCGACTTCTCGGCTGAGAAGCGCGGAAAAGTGCGGCCAGCTAGTTCGGTTAGCAAAGCCAAATTTGAGGTGGAGAATTTAGGTGAATGGGTTGCATGCTCCGTTGGTGCTAATTTCACACCCCATATAATCACCGTCAATTCTGGGGAGGACGTCACTATGAAGATCATATCGTTTTCTCAGCAAGGACCTCGAGCAATATGCATTCTTTCTGCAAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCTGATTCTTCCGGGGGCACATTGACGTATGAGGGGCGGTTTGAAATTCTGTCGTTGTCAGGCTCATTCATGCCAAGCGAAAGTGGAGGAACACGGAGCAGATCTGGCGGGATGAGCGTTTCTCTAGCAAGTCCAGATGGACGTGTTGTAGGCGGTGGAGTAGCTGGTCTATTGGTAGCTGCAAGTCCGGTTCAGGTAGTGGTAGGCAGTTTTCTGGCAGGAAACCAACACGAGCAAAAGCCAAAGAAACAGAAACACGAGGTGATATCGACTGCTACACCGACTGCTGCCGTTCCCATGTCAACTGCAGATCCAATTCCTCTCCTGACGTCTTCGTCTTCCTTCCGTGGAGACAATTGGTCCGCAGTGCCAGCAGATACCAGGAATAAGCCTACTGACATTAACGTGTCCCTGTCTGGCGGCTAA 1053 0.5223 MMRQMLNLLISGEPFQQQRVLNMEARDGVSSAVTVVGSDAPSDYHVAPRTENPATTGGSTTPTPPPAPSTQGSVPPPQTAALATPPAGMTMPVKKKRGRPRKYGPDGSVTMALSPKPISSSAPPHVIDFSAEKRGKVRPASSVSKAKFEVENLGEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQKHEVISTATPTAAVPMSTADPIPLLTSSSSFRGDNWSAVPADTRNKPTDINVSLSGG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1988 350 MobiDBLite consensus disorder prediction 39 124 - -
Glsi05g1988 350 CDD DUF296 166 257 IPR005175 -
Glsi05g1988 350 Gene3D - 167 300 - -
Glsi05g1988 350 MobiDBLite consensus disorder prediction 59 73 - -
Glsi05g1988 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 316 IPR039605 GO:0003680
Glsi05g1988 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 284 - -
Glsi05g1988 350 ProSiteProfiles PPC domain profile profile. 162 301 IPR005175 -
Glsi05g1988 350 FunFam AT-hook motif nuclear-localized protein 1-like 167 297 - -
Glsi05g1988 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 280 IPR005175 -
Glsi05g1988 350 MobiDBLite consensus disorder prediction 314 350 - -
Glsi05g1988 350 MobiDBLite consensus disorder prediction 308 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1988 Glsi-ChrGlsi05 66928863 66934902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1988 20 348 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.465 2.18e-133 383