Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1969 ATGTTTATAGCTTCTCTTGTTAGCCGTGTTTTTTTGTCCGGAACTCACTGTTACATTCTCCGGAGTGTGAATGTGAAAGATAAAAAGTTCTTTACTTTTAGATTGAAATGGTTGTTTCGGGATCGGACAAATGACAATGCTGCTGGCATTTCCTCTGGATATACTGCCACTGTTATATTAGGGTTGAACGATATGCCCATTTCAGATACCAAAAACCAGGCCCTTTGGTCTAAATTGACAAAGACATGCACGCATCTTCGTGATACTGATCCAACTTATAATGAATCTGGCACAGCTTGGCAGCAGAAGAATAGTCTGTCGATCTGCTTCTTGAACATTGGGGAGTACCATCTGGCAGTGTTAATCAGATCAGTTTTCTCCCAACACATCAGACGGCTCTCTTTCTCATCCAGACCAAGACTTCTAGCTATCACCCACACTCTACCATTATCTGCTGCTAATAACGACACGAGAGGGCCTTATATAAAGGCTGGTGTGGGGCTTTTGGGTCATTCCAAGGCTATTCTTGGTGAGACTTTAGCACTAGTTTGGAACTGCGGTGTATTGATTAGTGCTATGGGGAGGCAACCCTGCTGTGACAAACTTGGTGTGAAAAAAGGACCATGGACAGCCGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGAGCTGTTCCCAAGCTCGCTGGCCTCCGCCGTTGCGGTAAGAGTTGCCGCCTTCGTTGGACTAATTATCTTCGCCCTGATTTAAAGAGAGGACTTCTCACAGAAGCAGAAGAGCAACTCGTTATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGATTACCAGGAAGGACAGACAATGAAATTAAAAATCATTGGAACACCCACATCAAGAAAAAGCTTCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTTAATAAACAAGCTGCGTCCCAGGAAACTTCTTCCCCTGCAGAGAATATGCCACAATCTGGCAACAGCCATCAGGTTAAGGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGCTCATCTCAAGCTGAAAATTCTTCCGGGGATGAATCCCTTTTGCTAGATAGCATTTGCAGCGATGACTCTCTGATGAACAGCTTGTGGCTGGACGAGACACCACTGGTGGATGCATTGTGGGACACTACACCTAAAGTGGAGAATACCAATAATGACATGGGCCTGCTTTCTTGGGAGGACAATTGTGCTTGGTTTTTGGACTGTCAGGACTTCGGTATTCATGATTTTGGTTTTAATTGTTTTAACGATATCGAGTCAAATGCACTGCAAACCTTAGGAATGGAGGAGAAGGGGCATTAG 1380 0.4493 MFIASLVSRVFLSGTHCYILRSVNVKDKKFFTFRLKWLFRDRTNDNAAGISSGYTATVILGLNDMPISDTKNQALWSKLTKTCTHLRDTDPTYNESGTAWQQKNSLSICFLNIGEYHLAVLIRSVFSQHIRRLSFSSRPRLLAITHTLPLSAANNDTRGPYIKAGVGLLGHSKAILGETLALVWNCGVLISAMGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQETSSPAENMPQSGNSHQVKETDGVLNSEENSSSSQAENSSGDESLLLDSICSDDSLMNSLWLDETPLVDALWDTTPKVENTNNDMGLLSWEDNCAWFLDCQDFGIHDFGFNCFNDIESNALQTLGMEEKGH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1969 459 CDD SANT 263 304 IPR001005 -
Glsi05g1969 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 253 IPR017930 -
Glsi05g1969 459 Pfam Myb-like DNA-binding domain 206 253 IPR001005 -
Glsi05g1969 459 Pfam Myb-like DNA-binding domain 263 303 IPR001005 -
Glsi05g1969 459 Gene3D - 204 259 - -
Glsi05g1969 459 SUPERFAMILY Homeodomain-like 203 300 IPR009057 -
Glsi05g1969 459 SMART sant 258 306 IPR001005 -
Glsi05g1969 459 SMART sant 205 255 IPR001005 -
Glsi05g1969 459 FunFam MYB transcription factor 203 259 - -
Glsi05g1969 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 308 IPR017930 -
Glsi05g1969 459 FunFam MYB transcription factor 262 339 - -
Glsi05g1969 459 ProSiteProfiles Myb-like domain profile. 201 253 IPR001005 -
Glsi05g1969 459 Gene3D - 263 346 - -
Glsi05g1969 459 PANTHER F14D16.11-RELATED 193 361 - -
Glsi05g1969 459 ProSiteProfiles Myb-like domain profile. 254 304 IPR001005 -
Glsi05g1969 459 CDD SANT 208 253 IPR001005 -
Glsi05g1969 459 MobiDBLite consensus disorder prediction 322 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1969 Glsi-ChrGlsi05 66802085 66809375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1969 193 451 MYB Transcription Factor Family AT4G12350 60.140 9.89e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi05g1969 Myb_DNA-binding 6e-13 CL0123