Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1965 ATGGGAGAATTGCATCTTGACATCATTGTTGATCGACTCAAGAGAGAATTTAAGGTTATATCTCCTATTCCATGTGGAAGCAAATGTGGGTGCACCTCAAGTAAACTACAGAGAAAGCATTTCCAAAATCTCAGAAGTGATGTGCACAAGAAACAATCAGGTGGACAAGGTCAATTTGCTGATATCACAGTACGGTTTGAACCCATGGAGCCAGTACTTGTAGATGGTTCTTACCACGATGTAGATTCAAGTGTCCTTGCATTCCAGTTGGCTGCAAGAGGAGCCTTTCGGGAGGGAATGAGAAAAGCTGTGCCAAAGATGCTTGAACCCATAATGAAAGTTGAAGTTATTACTCCTGAAGAACATCTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGCCAGATCAACAACTTTGGTGACAAACCTGGAGGCCTTAAGGTTGTTGATGCGCTAGTTCCTCTTGCCGAGATGTTTCAGTACGTCAGTACACTCAGGGGGATGACGAAAGGCCGTGCTTCCTACACAATGCAATTAGCCAAGTTTGATGTTGTACCTCAGCACATTCAGAATCAGCTGGCCTCAAAGGAGCAAGGAGTTGCTGCTTAA 612 0.4395 MGELHLDIIVDRLKREFKVISPIPCGSKCGCTSSKLQRKHFQNLRSDVHKKQSGGQGQFADITVRFEPMEPVLVDGSYHDVDSSVLAFQLAARGAFREGMRKAVPKMLEPIMKVEVITPEEHLGDVIGDLNSRRGQINNFGDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLASKEQGVAA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1965 203 CDD EFG_mtEFG_C 109 187 IPR035649 -
Glsi05g1965 203 SMART EFG_C_a 106 194 IPR000640 -
Glsi05g1965 203 Pfam Elongation factor G C-terminus 107 193 IPR000640 -
Glsi05g1965 203 SUPERFAMILY EF-G C-terminal domain-like 109 197 IPR035647 -
Glsi05g1965 203 FunFam Elongation factor G 110 181 - -
Glsi05g1965 203 Gene3D - 45 71 IPR014721 -
Glsi05g1965 203 Gene3D - 72 107 IPR014721 -
Glsi05g1965 203 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 1 70 - -
Glsi05g1965 203 SUPERFAMILY Ribosomal protein S5 domain 2-like 48 105 IPR020568 -
Glsi05g1965 203 Gene3D - 108 202 - -
Glsi05g1965 203 Pfam Elongation factor G, domain IV 72 103 IPR005517 GO:0005525
Glsi05g1965 203 SMART EFG_IV_2 37 104 IPR005517 GO:0005525
Glsi05g1965 203 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1965 Glsi-ChrGlsi05 66781319 66784960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1965 51 174 Eukaryotic Initiation Factors Gene Family AT1G56070 30.469 8.21e-09 52.8