Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1964 ATGGCTGACGAAGCCAAAGCCAAAGGCAACACCGCCTTCTCTTCCGGCGATTTCGCCGCTGCTATCCGTCACTTCTCCGATGCCATAGCTCTATCCCCCGATAACCACGTCCTCTATTCGAATCGATCCGCTGCTTACGCTTCCTTAAACAAATACAGTGAAGCCCTAGATGATGCCAAGAAGACCGTCGAGTTGAAGCCCGATTGGTCTAAGGGCTACAGCCGGCTCGGTGCTGCACATCTTGGACTTGGCCAGCATGGTGGCGCTATTGCCGCTTACAAAAAGGGGCTTGAGATCGACCCCAATAACGAAGTACTCAAATCCGGCTTAGCCGATGCCCAGGCGGCTGCTTCGAGGTCCCGTTCGGTGCCACAGCCGAACAATCCCTTCGGTGAAGCTTTTTCTGGACCCGATATGTGGGCCAGGCTCACTGCTGACCCGACGACTAGGGCGTACCTTCAACAACCTGATTTTGTGACGATGATGCAGGATATTCAGAAAAATCCTAACAATCTAAACTTGTACTTGAAGGATCAAAGAATTATGCAAGCCCTTGGGGTTTTGCTCAACCTGAAGATTCGTACCCCAAGCGATGACACTGACATGCCAGAGTCTTCACCTTCGCCCCCGCCCCCGGAGAGGAAGAGAGCAGCCGAAGCTGAGCTTGCGAAGGAAGAGAAGCAGCCGGAGGCCATGGAATTGACGGAGGAGGAGGGGGAAGCGAAGGAGAATAAAGCACTGGCACTGAGGGAAAAGGAGGTAGGCAATGTGGCATATAAGAAAAAGGATTTCGAAACAGCAATTCAACATTATTCAAAGGCGATAGAGTTGGATGACGAGGATGTATCATATCTTACAAACCGCGCTGCTGTTTATTTGGAGATGGGAAAGTACGAGGAGTGCATAAAAGATTGTGACAAGGCTGTTGAGAGGGGAAGAGAGCTGAGATCAGATTTCAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGCCCTGGTTAAAATGGCAAAATGCTCAAAGGATTATGAACCTGCCATAGAGACGTTCCAGAAAGCACTTACAGAGCATCGGAACCCAGACACCTTGAAGAAACTGAATGATGCTGAAAAAGCTAAAAGAGATCTAGAACAACAAGAGTACTTTGATCCCAAATTGGCTGATGAGGAGCGAGAGAAAGGTAACGAATTCTTCAAGCAGCAGAAGTATCCCGAGGCTGTGAAGCATTACACAGAGTCCATTCAAAGGAACCCTAAAGATCCTAGGGCATACAGTAACAGAGCTGCTTGCTACACAAAACTGGGGGCAATGCCTGAGGGTTTGAAGGACGCGGACAAATGCATTGAGCTAGATCCGACCTTCTCAAAGGGTTACACTAGAAAAGGTGCTATACAGTTTTTCATGAAAGAATATGATAAAGCTATTGAAACATATCAAGAGGGGTTGAAACATGACCCTAACAACCAGGAGTTGCTTGATGGCATAAGAAGATGTGTTGAACAAATTAACAAGGCTAGCCGTGGGGATTTAAGTCCTGAGGAGTTGAAGGAGAGACAGGCCAAGGGAATGCAGGACCCAGAGATACAGAACATCCTCCAAGACCCGGTTATGAGACAGGTATTGAGTGACTTGCAGGAAAATCCCAAGGCTGCACAGGAACATACAAAGAATCCAATGGTGATGAGCAAGATCCAAAAGCTGGTCAGTGCTGGCATTGTCCAGATCAGATAA 1731 0.4806 MADEAKAKGNTAFSSGDFAAAIRHFSDAIALSPDNHVLYSNRSAAYASLNKYSEALDDAKKTVELKPDWSKGYSRLGAAHLGLGQHGGAIAAYKKGLEIDPNNEVLKSGLADAQAAASRSRSVPQPNNPFGEAFSGPDMWARLTADPTTRAYLQQPDFVTMMQDIQKNPNNLNLYLKDQRIMQALGVLLNLKIRTPSDDTDMPESSPSPPPPERKRAAEAELAKEEKQPEAMELTEEEGEAKENKALALREKEVGNVAYKKKDFETAIQHYSKAIELDDEDVSYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNDAEKAKRDLEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTESIQRNPKDPRAYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYTRKGAIQFFMKEYDKAIETYQEGLKHDPNNQELLDGIRRCVEQINKASRGDLSPEELKERQAKGMQDPEIQNILQDPVMRQVLSDLQENPKAAQEHTKNPMVMSKIQKLVSAGIVQIR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1964 576 Coils Coil 359 379 - -
Glsi05g1964 576 SMART CBM 525 564 IPR006636 -
Glsi05g1964 576 SMART CBM 136 175 IPR006636 -
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Glsi05g1964 576 FunFam hsp70-Hsp90 organizing protein 3-like 386 500 - -
Glsi05g1964 576 MobiDBLite consensus disorder prediction 214 246 - -
Glsi05g1964 576 Coils Coil 232 252 - -
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 248 281 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 421 454 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 387 420 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 323 360 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 36 69 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 70 103 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 455 488 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 282 315 IPR019734 GO:0005515
Glsi05g1964 576 SMART tpr_5 2 35 IPR019734 GO:0005515
Glsi05g1964 576 Pfam Tetratricopeptide repeat 7 67 - -
Glsi05g1964 576 Pfam Tetratricopeptide repeat 456 488 IPR001440 GO:0005515
Glsi05g1964 576 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Glsi05g1964 576 PANTHER TPR REPEAT CONTAINING PROTEIN 2 548 - -
Glsi05g1964 576 SUPERFAMILY TPR-like 8 494 IPR011990 GO:0005515
Glsi05g1964 576 Pfam TPR repeat 255 296 - -
Glsi05g1964 576 Pfam TPR repeat 394 435 - -
Glsi05g1964 576 Gene3D Tetratricopeptide repeat domain 385 500 IPR011990 GO:0005515
Glsi05g1964 576 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Glsi05g1964 576 Pfam STI1 domain 137 190 IPR041243 -
Glsi05g1964 576 Pfam STI1 domain 517 568 IPR041243 -
Glsi05g1964 576 FunFam Stress-induced phosphoprotein 1 1 116 - -
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Glsi05g1964 576 Gene3D - 125 193 - -
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Glsi05g1964 576 Gene3D Tetratricopeptide repeat domain 245 381 IPR011990 GO:0005515
Glsi05g1964 576 Gene3D - 506 576 - -
Glsi05g1964 576 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 508 576 - -
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Glsi05g1964 576 MobiDBLite consensus disorder prediction 195 246 - -
Glsi05g1964 576 ProSiteProfiles TPR repeat profile. 421 454 IPR019734 GO:0005515
Glsi05g1964 576 FunFam Stress-induced phosphoprotein 1 245 379 - -
Glsi05g1964 576 FunFam Putative stress-induced-phosphoprotein 1 126 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1964 Glsi-ChrGlsi05 66777043 66780090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1964 1 99 U-box Gene Family AT3G07370 27.273 1.43e-07 51.6