Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1963 ATGGCCGACGAAGCCAAAGCTAAAGGGAACGCCGCATTCTCTTCCGGCGATTTCGCTACTGCTATTCGTCACTTCTCCGACGCCGTTGCTCTATCCCCCGATAACCACGTCCTCTATTCGAATCGATCCGCCGCTTACGCTTCCCTACACAAATACAGTGAAGCCTTAGATGATGCCAAGAAGACCGTCGAGCTGAAGCCCGATTGGTCTAAGGGCTACAGCCGGCTCGGTGCTGCACATCTTGGACTTGGCCAGCATGGTGACGCTGTTGCCGCTTACAAAAAGGGGCTTGAGATCGACCCCAATAATGAAGCACTCAAATCCGGCTTAGCTGATGCCCAGGCGGCTGCTTCGAGGTCCCGTTCGGTGCCTCCGCCGAATAACCCCTTCGGTGAAGCTTTTTCTGGACCCGACATGTGGGCCAGGCTGACTGCTGACCCGACGACGAGGGCGTACCTTCAACAACCTGATTTTGTGATGATGATGCAGGACATTCAGAAAAATCCCAACAATCTAAATTTGTACTTGAAGGATCAAAGAATCATGCAAGCCTTTGGGGTTTTGCTCAACCTGAAGATTCGTAATCCGAGCGATGACACTGATATGCCAGAGTCTTCACCTTCGCCCCCGCCCCCGGAGAGGAAGAGAGCAGCCGAAGCAGAGCCTGCCAAGGAAGAGAAGCAACCCGAGCAAGAGCCGGAGCCTGTGGAAGTGACAGAGGACGTGAGGAAAGCGAAGGAGAAGAAGGCTCAGGCTCAGAGGGAAAAGGAGGCAGGCAATGCGGCATACAAAAAGAAGGATTTCGAAACAGCAATTCAACATTACTCAAAGGCGATGGAATTGGATGACGATGATATATCATATCTAACAAATCGCGCTGCTGTTTATTTGGAGATGGGAAAGTACGACGAGTGCATAAAAGATTGTGACAAGGCTGTTGAGAGGGGAAGAGAGCTGAGATCAGACTTCAAGATGATAGCAAAAGCTTTGACAAGGAAGGGAACTGCCCTGGTCAAAATGGCAAAATGCTCAAAGGATTATGAGCCTGCCATAGAGGCTTTCCAGAAAGCTCTTACGGAGCATCGCAACTCAGACACCTTGAAGAAACTGAATGATGCTGAAAAAGCTAAGAAAGATCTAGAACAGCAAGAGTACTTTGATCCAAAACTGGCTGATGAGGAGCGAGAGAAAGGTAATGAATTCTTCAAGGAGCAGAAGTATCCTGATGCCGTGAAGCATTACACAGAGTCCATAAGAAGAAACCCTAAAGATCCTAGGGCTTACAGTAACAGAGCTGCGTGCTACACAAAATTGGGGGCAATGCCTGAGGGTTTGAAGGATGCTGACAAATGCATTGAGCTAGATCCGACCTTCTCAAAGGGTTATAATAGAAAAGGCGCTGTACAATTTTTCATGAAAGAATACGACAAAGCTATGGAAACATATCAAGAGGGGTTGAAACACGACCCTAACAACCAGGAGTTGCTTGATGGCATAAAAAGATGTGTTGAACAAATTAAGAAGGCCAGCCGTGGGGATTTAAGTCCTGAGGAGTTGAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAGATACAGAACATTCTCCAAGATCCTGTTATGAGACAGGTATTGAGTGATTTCCAGGAAAATCCCAGGGCTGCACAGGAACACACAAAGAATCCAATGGTGATGAGCAAGATCCAAAAGCTGGTCAGTGCTGGCATTGTCCAGATCAAATAA 1743 0.4825 MADEAKAKGNAAFSSGDFATAIRHFSDAVALSPDNHVLYSNRSAAYASLHKYSEALDDAKKTVELKPDWSKGYSRLGAAHLGLGQHGDAVAAYKKGLEIDPNNEALKSGLADAQAAASRSRSVPPPNNPFGEAFSGPDMWARLTADPTTRAYLQQPDFVMMMQDIQKNPNNLNLYLKDQRIMQAFGVLLNLKIRNPSDDTDMPESSPSPPPPERKRAAEAEPAKEEKQPEQEPEPVEVTEDVRKAKEKKAQAQREKEAGNAAYKKKDFETAIQHYSKAMELDDDDISYLTNRAAVYLEMGKYDECIKDCDKAVERGRELRSDFKMIAKALTRKGTALVKMAKCSKDYEPAIEAFQKALTEHRNSDTLKKLNDAEKAKKDLEQQEYFDPKLADEEREKGNEFFKEQKYPDAVKHYTESIRRNPKDPRAYSNRAACYTKLGAMPEGLKDADKCIELDPTFSKGYNRKGAVQFFMKEYDKAMETYQEGLKHDPNNQELLDGIKRCVEQIKKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLSDFQENPRAAQEHTKNPMVMSKIQKLVSAGIVQIK 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515
Glsi05g1963 580 FunFam hsp70-Hsp90 organizing protein 3-like 390 504 - -
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Glsi05g1963 580 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Glsi05g1963 580 Gene3D - 510 580 - -
Glsi05g1963 580 FunFam Stress-induced phosphoprotein 1 1 116 - -
Glsi05g1963 580 Coils Coil 242 262 - -
Glsi05g1963 580 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Glsi05g1963 580 SMART tpr_5 425 458 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 2 35 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 36 69 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 327 364 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 70 103 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 286 319 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 391 424 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Glsi05g1963 580 SMART tpr_5 252 285 IPR019734 GO:0005515
Glsi05g1963 580 SUPERFAMILY TPR-like 390 503 IPR011990 GO:0005515
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Glsi05g1963 580 Pfam STI1 domain 521 572 IPR041243 -
Glsi05g1963 580 Pfam STI1 domain 137 190 IPR041243 -
Glsi05g1963 580 MobiDBLite consensus disorder prediction 214 261 - -
Glsi05g1963 580 PANTHER TPR REPEAT CONTAINING PROTEIN 2 552 - -
Glsi05g1963 580 SUPERFAMILY TPR-like 251 378 IPR011990 GO:0005515
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Glsi05g1963 580 SMART CBM 529 568 IPR006636 -
Glsi05g1963 580 SMART CBM 146 185 IPR006636 -
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Glsi05g1963 580 Coils Coil 363 383 - -
Glsi05g1963 580 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Glsi05g1963 580 Gene3D Tetratricopeptide repeat domain 389 504 IPR011990 GO:0005515
Glsi05g1963 580 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Glsi05g1963 580 Pfam Tetratricopeptide repeat 460 492 IPR001440 GO:0005515
Glsi05g1963 580 Pfam Tetratricopeptide repeat 7 67 - -
Glsi05g1963 580 FunFam Putative stress-induced-phosphoprotein 1 126 194 - -
Glsi05g1963 580 FunFam Stress-induced phosphoprotein 1 249 383 - -
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Glsi05g1963 580 Gene3D - 126 193 - -
Glsi05g1963 580 MobiDBLite consensus disorder prediction 116 135 - -
Glsi05g1963 580 Gene3D Tetratricopeptide repeat domain 249 385 IPR011990 GO:0005515
Glsi05g1963 580 MobiDBLite consensus disorder prediction 194 261 - -
Glsi05g1963 580 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Glsi05g1963 580 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 512 580 - -
Glsi05g1963 580 Pfam TPR repeat 259 300 - -
Glsi05g1963 580 Pfam TPR repeat 398 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1963 Glsi-ChrGlsi05 66770642 66774528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1963 1 99 U-box Gene Family AT3G07370 26.263 9.31e-07 48.9