Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1960 ATGAATACATTTTCACATGTTCCTCCAGGGTTTCGGTTCCATCCCACCGATGAAGAACTTGTTGATTACTACCTTAGAAAAAAGGTAGCTTCTAAAAGGATTGACCTAGATGTTATTAAAGATGTGGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAAGTATGCAAAATAGAAGAGGAAGAACAAAATGAATGTTATTTCTTCAGCCATAAAGATAAGAAGTACCCAACTGGAACTCGCACGAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACGGGAAGAGATAAGGCAATCTACTGCAGGCATTGCCTGATTGGGATGAGAAAGACTCTTGTTTATTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGACTGGATCATGCATGAGTACCGTCTTGAAACAAAGGAAAATGGAATTCCTCAGGAAGAAGGGTGGGTTGTATGTAGAGTATTCAAGAAGCGAATGACAAGCATGCGGAAAGTGGGGGAGTATGAGTCACCTTGTTGGTATGATGACCAAGTCTCCTTCATGCAAGAGCTTGAATCTCCAAGGCGAAGTTCTCACCCTTTCCGCCCTCACTACCGTTGCAAGCAGGATGTTGAATTGCAATATAACATACCCCGTGATGCTTTCCTTCAGCTCCCTCAACTTGAAAGCCCCAAAGTTCCTCAATCAGCAACCACTTTGAGCGTAGTCCCTTATTATGGCTATGATAGGACCTTGCAGTCATCATCACTCACTCAAGAAGAAAACATACCACACTGCAATCAACAAAATCTAGACTCGCTGTTTCCAAACAATGATCAAGTAACTGATTGGCGAGTTCTTGACAAATTTGTTGCTTCTCAACTCAGCCAAGACCAAGATGCTTCCAAGGAAACTAGTTATTCCAATACAACACTCCACGTGGATCAACAAATTGCTATGCTAGCAAACGAATCCAAAAGGCCAGAAATTGCCGAGGAATATGCCTCCACATCCACCTCCTGTTGCCTGATTGACCTGTGGAAGTGA 1023 0.4272 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQEVCKIEEEEQNECYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYCRHCLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLETKENGIPQEEGWVVCRVFKKRMTSMRKVGEYESPCWYDDQVSFMQELESPRRSSHPFRPHYRCKQDVELQYNIPRDAFLQLPQLESPKVPQSATTLSVVPYYGYDRTLQSSSLTQEENIPHCNQQNLDSLFPNNDQVTDWRVLDKFVASQLSQDQDASKETSYSNTTLHVDQQIAMLANESKRPEIAEEYASTSTSCCLIDLWK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1960 340 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Glsi05g1960 340 FunFam NAC domain-containing protein 16 160 - -
Glsi05g1960 340 Coils Coil 339 340 - -
Glsi05g1960 340 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Glsi05g1960 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 285 - -
Glsi05g1960 340 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Glsi05g1960 340 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1960 Glsi-ChrGlsi05 66747733 66749011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1960 1 340 NAC Transcription Factor Family AT1G12260 59.659 3.00e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi05g1960 NAM 5.1e-37 No_clan