Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1959 ATGGAAGTTGCACTTCACCCATCCCATTTGCGAAGGAATGATGACGCGGTTGCCTTTTGGGGAAGAGGGAATCCGGATGGTGATGGTTCTGACCTCTCTCAGATAAATGAATATCAAGAAAGGAATTTTGAGAAGAAAAAGGGGCTACCCGAGATGTCATCCTCTTCGTTGGACCACCTCCCTCCTTCGGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACTGTCCTCGCCGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACTGTGCGATGCGGCCATTGCACCAACCTCCTGCCAGTCAACATGCGTGGATTGCTTTTGCCATCGCCCAACCAATTTCATCTTGCTCACTCTTTCTACTCTCCGTCTCATAATCTTGTGGAGGAGATGCCAAACCAGTCCCCAAATGTTTTGATCAATCAGACCAACTCATCCAATGACTTCTCTATGCCTTCTAGGATTGCAGCTGATGAGATACCAAGGCCTCCTCTTATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCCTACAATCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTTCCGCACATTCACTTCGGTCTCATGCCTGATCAGACTGCAAAGAAAACAAATGTGCGCCAGCAGGAAGGAGAGGATGTTCATATGAAAGATGGGTTTTTTGCTTCGGCAAATGTTGGTGTTTCTCCGTACTAA 783 0.4815 MEVALHPSHLRRNDDAVAFWGRGNPDGDGSDLSQINEYQERNFEKKKGLPEMSSSSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHLAHSFYSPSHNLVEEMPNQSPNVLINQTNSSNDFSMPSRIAADEIPRPPLINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTAKKTNVRQQEGEDVHMKDGFFASANVGVSPY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1959 260 Gene3D High mobility group box domain 169 243 IPR036910 -
Glsi05g1959 260 FunFam Axial regulator YABBY 169 240 - -
Glsi05g1959 260 Pfam YABBY protein 62 224 IPR006780 GO:0007275
Glsi05g1959 260 SUPERFAMILY HMG-box 168 217 IPR036910 -
Glsi05g1959 260 CDD HMG-box_SF 178 214 - -
Glsi05g1959 260 PANTHER PROTEIN YABBY 6-RELATED 52 236 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1959 Glsi-ChrGlsi05 66736031 66739099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1959 73 258 C2C2-YABBY Transcription Factor Family AT4G00180 58.852 3.61e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Glsi05g1959 YABBY 1.9e-71 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1959 05 66736031 66739099 Glsi05g1959 05 66736031 66739099 ECH