Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1955 ATGGACTTGAAGTCCTCTCATGCTTCTCCTGTTCTTACTGACCCTGTTCCCGTCAACAAGTCAAGGCTAGGAATTCATTCTAGTATGTTAACTTACTCCCAGCAAGATCCGCCACTGTCACCTGGTCCCCCAAAATATACAAGAACCGGTTCGAGGAAAAGTGCAGGCAGTCTCGATGATGTTCGGTCCAATGGATGGCTGGACGCCATGAAGGCCTCTTCACCCCCAAGGAAGAAGCTAAGTAAGGTTTCTAACACTCAGGTCGCTTCATTTGACTGTGACATTGAAGACTATCACTCCTGGATGCTTGATTATCCATCAGCACTAGACTCTTTTGAGAAAATTATTGACCGTGGAAAGAATAAGAAGATTGCAGTGTTTCTTGATTATGATGGAACTCTTTCACCAATAGTAGATGATCCAGACTGTGCTTTTATGTCCGAAGTTATGCGTGCAACGGTGAGAAGTGTGGCAAAGTGTTTTCCCACGGCCATTATTAGTGGAAGAAGCCGCGACAAGGTTTTTGATTTAGTAAAATTAAGGGAGCTATACTATGCCGGTAGTCACGGGATGGACATTATTGGCCCTGTCAGCGAGACTCTGCCCAATAAGCATCCAAATTGTGTAAAATCTACTGACCAACAGGGGAAGGAAATAACTCTGTTTCAACCTGCAAAAGAATTCCTGCCTATGATTGATGAGGTTTTTAGAAAGCTGGTCGAGATTACTAAAGATATCAAAGGCACAAAGGTTGAAAATCACAAGTTTTGCGCTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGATAACCATCGGACAACTTGTCCATGACATGTTACAAAATTACCCACGTTTGCGTTCGACTCACGGACGGAAGGTTTTAGAGATCCGTCCAGTGATTGATTGGAACAAAGGAAAAGCAGTTGAATTTTTGCTTGAATCTCTAGGGTTAAGTGACAGGGATGACGTGCTTCCTATTTACATTGGAGATGATAGGACTGATGAAGATGCCTTTAAGGTGCTGCGGGAGAGAAATCGAGGATATGGGATCTTGGTTTCATCTGTAAGGAAAGAAAGCAATGCCTTGTACTCTCTGAGGGATACCGCAGAGGTCATGAAATTTTTAAAGCTCCTGGTGAATTGGAAGAGCCAACAAGGAAGGAAGCACGGAGGCATTTGGATGGATGAAGAATATGGTAACTGTTGGGTTTATGGGATGGATGAAGAATCAGTGGAGCATGTACTCCTAAATTGTCCAAAAGCCAAACATGTCTGGGCATTTAACTCAGATTTGATGGAGCAAGTGGAGGAGTGGCGCAGTAAAGCAAGGCTCAATGAGCAGGTTGGGGATACAAATTCTATATGGCAACACTGCTTAAGGGTGTGGCAAGAGATTTGCTCGTCCTCGGGTTATGCACTTTTGAGAACGAATAAAATCCAAACAGAGATGCTACTGGGGGAGGCTAGAGACAGAACCATGTGGAGTCTGCAGCACCGCTCCGACCCACCATGTGGAAACATGCATACTAGACTTCATGTGAGCTCCGCTCAGACCCTTACAAATATATATATACGCATGCCAATCCTGCAAATGCATCACACACTTGTCTCATTCAGTTTAGTTTGTATAGTTTTCCCTTTTTTTCTTCTAGAATTGGCTGCTGAGAATTCCTAG 1680 0.4363 MDLKSSHASPVLTDPVPVNKSRLGIHSSMLTYSQQDPPLSPGPPKYTRTGSRKSAGSLDDVRSNGWLDAMKASSPPRKKLSKVSNTQVASFDCDIEDYHSWMLDYPSALDSFEKIIDRGKNKKIAVFLDYDGTLSPIVDDPDCAFMSEVMRATVRSVAKCFPTAIISGRSRDKVFDLVKLRELYYAGSHGMDIIGPVSETLPNKHPNCVKSTDQQGKEITLFQPAKEFLPMIDEVFRKLVEITKDIKGTKVENHKFCASVHYRNVEENNWITIGQLVHDMLQNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLSDRDDVLPIYIGDDRTDEDAFKVLRERNRGYGILVSSVRKESNALYSLRDTAEVMKFLKLLVNWKSQQGRKHGGIWMDEEYGNCWVYGMDEESVEHVLLNCPKAKHVWAFNSDLMEQVEEWRSKARLNEQVGDTNSIWQHCLRVWQEICSSSGYALLRTNKIQTEMLLGEARDRTMWSLQHRSDPPCGNMHTRLHVSSAQTLTNIYIRMPILQMHHTLVSFSLVCIVFPFFLLELAAENS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1955 559 Pfam Trehalose-phosphatase 127 370 IPR003337 GO:0003824|GO:0005992
Glsi05g1955 559 MobiDBLite consensus disorder prediction 1 20 - -
Glsi05g1955 559 Gene3D - 124 211 IPR023214 -
Glsi05g1955 559 Gene3D - 225 393 IPR023214 -
Glsi05g1955 559 MobiDBLite consensus disorder prediction 25 61 - -
Glsi05g1955 559 NCBIfam trehalose-phosphatase 122 381 IPR003337 GO:0003824|GO:0005992
Glsi05g1955 559 SUPERFAMILY HAD-like 125 384 IPR036412 -
Glsi05g1955 559 FunFam Trehalose 6-phosphate phosphatase 225 301 - -
Glsi05g1955 559 FunFam Trehalose 6-phosphate phosphatase 231 390 - -
Glsi05g1955 559 CDD HAD_TPP 125 375 - -
Glsi05g1955 559 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 48 390 IPR044651 GO:0004805|GO:0005992
Glsi05g1955 559 NCBIfam HAD-IIB family hydrolase 126 345 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1955 Glsi-ChrGlsi05 66709131 66719825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1955 120 380 Trehalose Biosynthesis Gene Families AT1G70290 27.536 1.05e-10 62.8