Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1924 ATGGAGAGGCACCAATGCAAGCTTTGCTCAAGGACATTCGCCAATGGCAGAGCATTGGGTGGCCACATGAAGGCTCACTTGGCCACCCTCCCCCTTCCTCCAAAGCCCGAACCACCCAGTGAGTCAACTTCCTGGTCATATTCCTCTTCCCAAGAAGAAGCAGAAGTAGCACTGGCATGCAGAGAATCAGAGGAAAAGGCTTTGAGTTATGTGTTGAGAGAGAACCCCAGGAAAAGTTTCAGGCTTGCAGATCCTGAGTTTGCTTTTGCAGTTAATACTGGGTCCGTCGTCCAAGATAGAGAGAGCGAGACCGAGTCAAAGAATCCAACTCGCCGACGATCCAAGCGAAACCGGAAGTCCAGCGTTGAAACAAGTCAAAGCCAGAACCAAAAATTGGAACTGAAGAAGCCTAAACTAAGTTTCACGGAGTCACCGACCGAACCAGAACCGGTGAGCTCAGTTTCTGATATTTCCCCTGATGAAGATGTTGCCATGTGCCTCATCATGCTTTCAAGGGACAGATGGATGAGAAATGTTGTGGAACAAGGTCAAGAGCAAGAAGAAGGAGGGCTGAGATCAGTGGAAATGTCAAAAGGATTGGAAGAGATCAAGGTGAAGAGAGTTCGCGGGAAGCATGAGTCTGAGAACATGAGAAAAACGATTCGATCTTCCCGAGCATTGGTCAGTCGCAAAAATATCTGCTTTCGTGATGCAGCAGAAGCCAAAATTGCAGGTAATGATAAAATTTTCGAATGCCCATTTTGTTACAAGGTGTTTGGGTCAGGACAAGCTCTTGGTGGCCACAAGAGATCTCACCTCATAGCAATAGCATCTTCTTCATCACCCGTTAATCATTCTGCTAAAAGTTTTATAGATCTCAACTTGCCAGCTCCAACAGAAGAAGATGAACTTAGTGTGGTTTCTGATGCCTAA 933 0.4652 MERHQCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPPSESTSWSYSSSQEEAEVALACRESEEKALSYVLRENPRKSFRLADPEFAFAVNTGSVVQDRESETESKNPTRRRSKRNRKSSVETSQSQNQKLELKKPKLSFTESPTEPEPVSSVSDISPDEDVAMCLIMLSRDRWMRNVVEQGQEQEEGGLRSVEMSKGLEEIKVKRVRGKHESENMRKTIRSSRALVSRKNICFRDAAEAKIAGNDKIFECPFCYKVFGSGQALGGHKRSHLIAIASSSSPVNHSAKSFIDLNLPAPTEEDELSVVSDA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1924 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 272 IPR013087 -
Glsi05g1924 310 SMART c2h2final6 250 272 IPR013087 -
Glsi05g1924 310 SMART c2h2final6 4 26 IPR013087 -
Glsi05g1924 310 MobiDBLite consensus disorder prediction 95 157 - -
Glsi05g1924 310 MobiDBLite consensus disorder prediction 29 49 - -
Glsi05g1924 310 SUPERFAMILY beta-beta-alpha zinc fingers 3 272 IPR036236 -
Glsi05g1924 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Glsi05g1924 310 MobiDBLite consensus disorder prediction 121 135 - -
Glsi05g1924 310 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Glsi05g1924 310 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Glsi05g1924 310 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 310 IPR044303 GO:0006355
Glsi05g1924 310 Pfam C2H2-type zinc finger 3 28 - -
Glsi05g1924 310 Pfam C2H2-type zinc finger 250 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1924 Glsi-ChrGlsi05 66503973 66504905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1924 2 305 C2H2 Transcription Factor Family AT1G02030 36.970 2.24e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g1924 zf-C2H2_6 1e-06 CL0361