Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1898 ATGGAAGAAGAAGCTGTCCTTATACACAGTGAAGCTCAACCAACCATTTCTGCCTCCACCTCCTCCATAGAAGCTTCTGCTGCAACTAAGCAAAGGGGGAACAGAGGCACTCACGGTAAACACCCAACGTACCGTGGAGTTCGCATGCGTCAATGGGGGAAATGGGTTTCCGAAATCAGAGAGCCAAGGAAGAAATCGAGAATTTGGCTCGGAACTTTCCCTAAGCCGGAGATGGCTGCTCGAGCTCATGACGTTGCGGCTCTTACAATCAAAGGCAGCTCAGCTATCCTCAATTTCCCGGAACTAGCCGCGGAGCTTCCGCGCCCAGCCAGCAACTCCCCCAAGGACGTCCAAGCAGCCGCCGCCAAGGCAGCTGCATTCAATAACCAAAGAAGCCGTGAAATGGAAGCCGAATCCAATATGAGGGGAGCGTCGTCGAATTCACAGTCGATGGATAAGGATGATACCTTAATCTTCGACCTCCCCGATCTCTTCCTCGACTTAAATAGTACTGTGGATGAGTTCCAATATTACTCGTCACCGTGGCTGGTTGCCGAAACTGAACACTCAGACTCAGGTTTCCAGCCGGAGGACCCTGTTCTATGGGATTCTTAA 615 0.5154 MEEEAVLIHSEAQPTISASTSSIEASAATKQRGNRGTHGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPKPEMAARAHDVAALTIKGSSAILNFPELAAELPRPASNSPKDVQAAAAKAAAFNNQRSREMEAESNMRGASSNSQSMDKDDTLIFDLPDLFLDLNSTVDEFQYYSSPWLVAETEHSDSGFQPEDPVLWDS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1898 204 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Glsi05g1898 204 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Glsi05g1898 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 172 - -
Glsi05g1898 204 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Glsi05g1898 204 MobiDBLite consensus disorder prediction 1 43 - -
Glsi05g1898 204 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Glsi05g1898 204 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Glsi05g1898 204 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Glsi05g1898 204 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Glsi05g1898 204 MobiDBLite consensus disorder prediction 128 151 - -
Glsi05g1898 204 MobiDBLite consensus disorder prediction 12 33 - -
Glsi05g1898 204 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Glsi05g1898 204 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1898 Glsi-ChrGlsi05 66315471 66316085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1898 35 201 AP2-EREBP Transcription Factor Family AT2G44940 50.242 3.58e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g1898 AP2 4.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1898 05 66315471 66316085 Glsi09g0207 09 1547778 1548383 CCT