Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1895 ATGACTCGGCGATGCTCTCATTGCACCCACAATGGCCACAACTCCAGGACTTGCCCGAACCGCGGAGTCAAGCTCTTTGGAGTTCGTTTGACTGATGGGTCGATCCGGAAGAGTGCTAGTATGGGCAGTCTCAGCCACTATGCTGCGTCGAATTCCGGAGCCCATCATGCTGGTTCTCACAATCCGGGTTCTCCTGTTGAGACGCCTGATCATGGTGCCGCCGCCGATGGTTACGCCTCCGAGGATTTCGTTCCTGGGTCATCGTCAATTTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACCGAGGAGGAACATAGGATGTTTTTGCTTGGATTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCAAAAAATTATGTTATATCAAGGACTCCCACTCAAGTAGCAAGCCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGAGGAAAAGACGTTCCAGTTTGTTTGACATCGTTGCAGATGAATCAACCGACACACCAATGGTGCCGCAAGACTTCTTGCCAGCTAGTCAGCCAAATGGTGAAACAGAAGGCAATGATCCCTTGCCTGCTCCTCCAGCCCTGGATGAAGAGTGCGAATCCATGGATTCTGGTTACTCAAATGATGGAGAGTCTGCCTCTTTAAACCCAGAAAGCTCACAATCACCCTACCCAGTGTTATATCCTGCATACCTTTCTCCTTTCTTCCCATTTCCTCTGCCCTATTGGTCGGGATACGGTCCAGAGCCGACCCAGAAGGAGACACATGAAGTGCTGAAGCCTACTGCGATACATTCTAAACGCCCAATCAATGTTGATGAATTGGTTGGCATGTCAAAACTGAGTTTAGGGGACTCTATTGGTGACTCTGGGCCCTCCTCTCTCTCACTAAAACTCCTTGAGGGACACTCTCGGCAGTCAGCTTTTCATGCAACTCCAGCATGTGGTAATTCAAACGTGAATGGCAGTGCGATCCATGCAGTTTAA 999 0.4935 MTRRCSHCTHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGSLSHYAASNSGAHHAGSHNPGSPVETPDHGAAADGYASEDFVPGSSSISRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIAKNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESTDTPMVPQDFLPASQPNGETEGNDPLPAPPALDEECESMDSGYSNDGESASLNPESSQSPYPVLYPAYLSPFFPFPLPYWSGYGPEPTQKETHEVLKPTAIHSKRPINVDELVGMSKLSLGDSIGDSGPSSLSLKLLEGHSRQSAFHATPACGNSNVNGSAIHAV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1895 332 MobiDBLite consensus disorder prediction 1 20 - -
Glsi05g1895 332 MobiDBLite consensus disorder prediction 174 188 - -
Glsi05g1895 332 SMART sant 96 146 IPR001005 -
Glsi05g1895 332 MobiDBLite consensus disorder prediction 49 100 - -
Glsi05g1895 332 FunFam transcription factor MYB1R1 98 149 - -
Glsi05g1895 332 MobiDBLite consensus disorder prediction 170 224 - -
Glsi05g1895 332 Gene3D - 98 150 - -
Glsi05g1895 332 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Glsi05g1895 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Glsi05g1895 332 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Glsi05g1895 332 PANTHER TRANSCRIPTION FACTOR KUA1 3 271 - -
Glsi05g1895 332 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Glsi05g1895 332 CDD SANT 99 144 IPR001005 -
Glsi05g1895 332 MobiDBLite consensus disorder prediction 209 224 - -
Glsi05g1895 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Glsi05g1895 332 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1895 Glsi-ChrGlsi05 66293426 66296234 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi05g1895 Myb_DNA-binding 5.2e-11 CL0123