Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1889 ATGGTTGAAAAGGAGGATTTAGGTTTGAGTCTGAGCTTAAGCTTCCCTCAGAATCCTCCAAATCCTCTCCACCTGAATCTCATGCCATCTTCTCCTCCTCCTTCCAATCTTCACAAACCTTCTTGGAACGAAGCCTTAACCTTCTCGGATCGAGATTCCGAAACATGCAGAGCCGAAGCTCGATCTTTCCTCCGAGGAATCGACGTGAACCGATTGCCTTCGGCGGTCGATTGCGAAGAGGAGGCAGGTGTTTCGTCTCCAAACAGCACGATTTCGAGCGTGAGCGGCAAGAGAAGTGAGAGGGAGGCCAACGGAGAAGAGCATGACATGGACAGAGATTGCTCTCGAGGAATCAGTGATGAAGAAGACGGTGAAACCTCGAGGAAAAAGCTTAGGCTTTCGAAGGACCAATCAGCTATTCTCGAGGAAAGCTTCAAAGAGCACAGTACTCTGAACCCCAAGCAAAAGTTGAATCTGGCAAAGCAGCTGGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACAGAGGTAGACTGTGAGTTCTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAGAACAGGCGATTGCAGAAGGAAGTTCAGGAGCTAAGAGCACTGAAACTTTCCCCGCAACTGTACATGCAAATGACCCCACCCACAACCCTCACCATGTGCCCATCATGTGAGCGGGTTGCTGTGCCGCCCTACGCGGCTGCCGCGGTTGGGGGCACCCGTCATCATCCGATGGCTCAAACTCACCCTCGGTCAATCCCCGTCGGGCCATGGGCCCCTGCAGCTGCCATTCCCCACTTGCACCCTAGATCGTGA 861 0.5285 MVEKEDLGLSLSLSFPQNPPNPLHLNLMPSSPPPSNLHKPSWNEALTFSDRDSETCRAEARSFLRGIDVNRLPSAVDCEEEAGVSSPNSTISSVSGKRSEREANGEEHDMDRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHSTLNPKQKLNLAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAAAVGGTRHHPMAQTHPRSIPVGPWAPAAAIPHLHPRS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1889 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 248 - -
Glsi05g1889 286 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Glsi05g1889 286 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Glsi05g1889 286 MobiDBLite consensus disorder prediction 83 98 - -
Glsi05g1889 286 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Glsi05g1889 286 Gene3D - 132 182 - -
Glsi05g1889 286 SMART HOX_1 126 188 IPR001356 GO:0003677
Glsi05g1889 286 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Glsi05g1889 286 MobiDBLite consensus disorder prediction 99 133 - -
Glsi05g1889 286 MobiDBLite consensus disorder prediction 22 36 - -
Glsi05g1889 286 Coils Coil 183 220 - -
Glsi05g1889 286 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Glsi05g1889 286 MobiDBLite consensus disorder prediction 78 133 - -
Glsi05g1889 286 SUPERFAMILY Homeodomain-like 115 185 IPR009057 -
Glsi05g1889 286 CDD homeodomain 128 185 IPR001356 GO:0003677
Glsi05g1889 286 Pfam HD-ZIP protein N terminus 1 102 IPR006712 GO:0005634
Glsi05g1889 286 PRINTS Lambda-repressor HTH signature 155 164 IPR000047 GO:0003677
Glsi05g1889 286 PRINTS Lambda-repressor HTH signature 164 180 IPR000047 GO:0003677
Glsi05g1889 286 MobiDBLite consensus disorder prediction 1 40 - -
Glsi05g1889 286 FunFam Homeobox-leucine zipper protein 18 113 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1889 Glsi-ChrGlsi05 66262831 66264418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1889 1 286 Homeobox Transcription Factor Family AT4G16780 64.310 1.29e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi05g1889 HD-ZIP_N 1e-35 No_clan