Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1886 ATGCATATAGAGGAACTTAAGGGAGGAGAGGTCGAAGGTGGAGAGGAAGGAATGCTATATGCCAGAAATGGTGTTATCGGCGGGGCAAGCTTTGTTGTGTCTGATGCAAAAAGAGCTCTGGTTGGAGCAGGGGCTCGTGCGCTCTTCTATCCCACTCTGCTTTATAATGTCGTTCGGAATAAGATTCAGGCCGAGTTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTCCCTATGGATGTTCCCCGCTTAAAGGAGCTTGGCGTTCGTGGAGTCATCACACTTAATGAGTCATATGAGACCTTGGTGCCAACCGCACTGTATCAAGCTCATGGAATTGACCATCTTGTGATACCTACCAGAGACTACTGTTTTGCACCTTCGTTGAATGACATATGCTGTGCTGTGGATTTCATTCATGAAAATGCATTGTCTGGACGGATTACATATGTCCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTGTTGTTATCTGTTACCTGGTGCATCACAAGTTAATGACACCTGATGCTGCATATGATTACGTAAAGTCGATTCGGCCGAGGGTACTTCTAGCTTCCTCTCAGTGGCAAGCTGTTCAGGAATACTACCACCTTAGGGTTAGGAGGGTTGTTACCTGTTCTCCCACAGCCTACCTCATAGTGAAAGCATCTGAGGCAGCAGCAGCTTCTCGAGACCTTGTAACATTTGATGACGGTTCTGTAGTGGTGGTAACGGAGTCCGATGTTGAAGGTTACGACCCAAGTATTCATTCGGGTACCACCGTGGGAAGTGAGATATGGGCAGATTTGAGTGTGTTTTACCGAGTGCGAGTTACTGGACAGGCAGCATGGGCAAGAATATCATGCCTTTGGGTGCGATGTCGTACGCACCAGAAAGTTTCAACAGAGAAACCGAGTGGGACAAATCACTTGGAAGGCATTAGTGTTGATATTCATGTCTATTGA 987 0.4711 MHIEELKGGEVEGGEEGMLYARNGVIGGASFVVSDAKRALVGAGARALFYPTLLYNVVRNKIQAEFRWWDKVDEFILLGAVPFPMDVPRLKELGVRGVITLNESYETLVPTALYQAHGIDHLVIPTRDYCFAPSLNDICCAVDFIHENALSGRITYVHCKAGRGRSTTVVICYLVHHKLMTPDAAYDYVKSIRPRVLLASSQWQAVQEYYHLRVRRVVTCSPTAYLIVKASEAAAASRDLVTFDDGSVVVVTESDVEGYDPSIHSGTTVGSEIWADLSVFYRVRVTGQAAWARISCLWVRCRTHQKVSTEKPSGTNHLEGISVDIHVY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1886 328 Gene3D Protein tyrosine phosphatase superfamily 68 216 IPR029021 -
Glsi05g1886 328 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Glsi05g1886 328 CDD PTPMT1 68 210 IPR044596 GO:0004721
Glsi05g1886 328 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
Glsi05g1886 328 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311|GO:0016791
Glsi05g1886 328 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 212 IPR029021 -
Glsi05g1886 328 SMART dsp_5 71 212 IPR020422 GO:0006470|GO:0008138
Glsi05g1886 328 FunFam Dual specificity phosphatase domain protein 68 215 - -
Glsi05g1886 328 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 302 - -
Glsi05g1886 328 Pfam Dual specificity phosphatase, catalytic domain 88 210 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1886 Glsi-ChrGlsi05 66252582 66255364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1886 10 328 Protein tyrosine phosphatase (PTP) family AT2G35680 61.585 2.17e-135 386