Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1878 ATGAGAAGAAGAGCTAAGGACATCGGGGAGCTAACGAATGGAGGGGTTATATATATAGAGAGTGGGTTCATGAACTTAGATATTCCTTTTCCTTTTTCCTCAGTTGAAAGTCGGCTATACGTTCAAAGATTCACGCCTATATATAGCCCTCTTCCACTCTCTCAGCCACTCAACTTGGAGAGACATACTTATCTCTTTCCATCTTCTGAAATATATTTCAAACACTGTTGTTTCTTCTTCTTCTTATTCTTCTTCTTCAGAACATCCATTAATTACATTGGAAAAAAATTCTCATCTCAGTCAGTCATGGCGAACCAAGTTGAGGCTTCGGCCCTCAATCGCATAAAATTGCATCTTTTAGGCGAACTGTCTCCACTGGGGACCTTCTCCTCTGACCCCAGCGGCTCAGCTACTGATATTTCTCAAAACCTTTGGTTTGAGGAAGAAAACTCAACAATTTCAACCTCTCAATCTCTTTGTTCCCAATCTTCGTGTTCTGACTCTTCCGTCAAGGTTTCCGATTACTTTCCCGAACTTTTCGAGTTCCCAATCAATTCTATACCTTCAACAGAAAATCGGATTGATCTATTTGAATACGAGTCCAAACCCCAATTAATTGACCCGTCTAGACCAAAGTCTCAAATCCAAAATTCACAATTTGACAGCAATATTTCCAATTTCGAATCAAATTCGCAGGCAGTATCAAGTCCTGGCTCCCAGTCCAACAATTGCCTGTTGGAGTTCGAACCAAGACCTCAAGCCTCGGAGAAGAAAGCTCTATCAAGTCGGAAACCAGCGTTGCAAATCTCGCTTCCGAAGAAAACGGAGTGGATCCAATTTGGAGAACCGGATCAGCAACAGGAGGTTGCAGAGACGTTTGTGAAGAACAAATCAAACCCCGGAGAGAAAAAGCACTACAGAGGGGTCAGACAGAGGCCGTGGGGCAAGTATGCTGCCGAGATCCGCGACCCGAACAAGCGGGGATCGAGGGTGTGGCTGGGAACATTTGACACAGCTATCGAAGCCGCCAAAGCCTACGACCGGGCTGCTTTTAAGCTTCGCGGCTCCAAAGCGATCCTAAACTTCCCCCTGGAAATCGGCGCATCGAGCTCGGTGGTCAGTGGGGGGGAGGGAAAACGCCGCCGTGAAGATGAGGAAGTGGAAGTAAAGGCAGTGGCGAAGAAGGTGAAAACGACGGAATGCGAGGTGAACAGTACAAGGGACACTCCGTTAACGCCGTCGAGTTGGACGGGGTTCTGGGACAACGAGATGAACGGGATTTTCAGTGTGCCGCCGTTATCGCCGTTATCTCCGCACCCGCATTTTGGTTATCAACACCTTATGGTTGTATGA 1353 0.4678 MRRRAKDIGELTNGGVIYIESGFMNLDIPFPFSSVESRLYVQRFTPIYSPLPLSQPLNLERHTYLFPSSEIYFKHCCFFFFLFFFFRTSINYIGKKFSSQSVMANQVEASALNRIKLHLLGELSPLGTFSSDPSGSATDISQNLWFEEENSTISTSQSLCSQSSCSDSSVKVSDYFPELFEFPINSIPSTENRIDLFEYESKPQLIDPSRPKSQIQNSQFDSNISNFESNSQAVSSPGSQSNNCLLEFEPRPQASEKKALSSRKPALQISLPKKTEWIQFGEPDQQQEVAETFVKNKSNPGEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEIGASSSVVSGGEGKRRREDEEVEVKAVAKKVKTTECEVNSTRDTPLTPSSWTGFWDNEMNGIFSVPPLSPLSPHPHFGYQHLMVV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1878 450 Pfam AP2 domain 305 355 IPR001471 GO:0003700|GO:0006355
Glsi05g1878 450 Gene3D AP2/ERF domain 304 365 IPR036955 GO:0003700|GO:0006355
Glsi05g1878 450 SMART rav1_2 305 369 IPR001471 GO:0003700|GO:0006355
Glsi05g1878 450 FunFam Ethylene-responsive transcription factor 2 304 365 - -
Glsi05g1878 450 SUPERFAMILY DNA-binding domain 305 365 IPR016177 GO:0003677
Glsi05g1878 450 ProSiteProfiles AP2/ERF domain profile. 305 363 IPR001471 GO:0003700|GO:0006355
Glsi05g1878 450 CDD AP2 304 363 IPR001471 GO:0003700|GO:0006355
Glsi05g1878 450 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Glsi05g1878 450 PRINTS Ethylene responsive element binding protein signature 345 365 IPR001471 GO:0003700|GO:0006355
Glsi05g1878 450 PANTHER DNA-BINDING DOMAIN 243 383 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1878 Glsi-ChrGlsi05 66227612 66235769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1878 103 450 AP2-EREBP Transcription Factor Family AT5G47230 44.318 1.69e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g1878 AP2 7.9e-16 CL0081