LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g1877	ATGTACGGACAAACCGGCTACGACTCCGATTTAGAACTTTTGGAGTCCATTAGCCGTCACTTGCTCGGCGAATCCAACGCTCTTCCCTTTACTAATTCGGCTGACATTTCTCCCAGCTCCGGTTTCGGCAACTTGTACCCATGCTTGAGCCATCACTGGGGCGAATTGCCGCTCAAAGAGGACGATTCCGAGGACATGGTACTCTACGGTGTACTCCGCGATGCGCTCAACGTTGGATGGGTCCCATCGCTCGATGTTGCCTCATCGGAAAGCGTGTCCTCGGTGAAATCGGAGCCGGAGGTGGCCCCGCAAGAGGAGCCGAAGGGGAAGCATTACCGAGGCGTACGTCGCCGGCCGTGGGGGAAGTTCGCGGCTGAGATCCGTGACCCGGCTAAAAATGGGGCTCGGGTATGGCTGGGAACATTTCAAACGGCTGAGGACGCGGCGCTGGCTTACGATAGAGCTGCATACAGGATGCGGGGGTCGCGAGCTCTGCTGAATTTCCCGCTGCGGGTGAACTCGGGTGAAGCTGAGCCGGTGAGAGTGAGAACGAAGCGGTCTTGCCAATCCCCGGAGGCATTGTCGTGTGGGTCGACGCCGAAGCGAAAGAAGACGGCGGTGAAAGTTGAAGCAGTGGGAAGTGAAGTGGCATGGGGGAGACAAGGAGAAGAGCAGCTATCGGTGAGCTAA	690	0.5783	MYGQTGYDSDLELLESISRHLLGESNALPFTNSADISPSSGFGNLYPCLSHHWGELPLKEDDSEDMVLYGVLRDALNVGWVPSLDVASSESVSSVKSEPEVAPQEEPKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFQTAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEAEPVRVRTKRSCQSPEALSCGSTPKRKKTAVKVEAVGSEVAWGRQGEEQLSVS	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g1877	229	Gene3D	AP2/ERF domain	110	172	IPR036955	GO:0003700\|GO:0006355
	Glsi05g1877	229	PANTHER	DNA-BINDING DOMAIN	93	200	IPR044808	GO:0003700\|GO:0009873
	Glsi05g1877	229	CDD	AP2	110	169	IPR001471	GO:0003700\|GO:0006355
	Glsi05g1877	229	PRINTS	Ethylene responsive element binding protein signature	112	123	IPR001471	GO:0003700\|GO:0006355
	Glsi05g1877	229	PRINTS	Ethylene responsive element binding protein signature	135	151	IPR001471	GO:0003700\|GO:0006355
	Glsi05g1877	229	FunFam	Ethylene-responsive transcription factor 2	110	170	-	-
	Glsi05g1877	229	ProSiteProfiles	AP2/ERF domain profile.	111	169	IPR001471	GO:0003700\|GO:0006355
	Glsi05g1877	229	SUPERFAMILY	DNA-binding domain	111	171	IPR016177	GO:0003677
	Glsi05g1877	229	MobiDBLite	consensus disorder prediction	92	112	-	-
	Glsi05g1877	229	SMART	rav1_2	111	175	IPR001471	GO:0003700\|GO:0006355
	Glsi05g1877	229	Pfam	AP2 domain	111	161	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g1877	Glsi-ChrGlsi05	66226866	66227555	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g1877	9	182	AP2-EREBP Transcription Factor Family	AT4G17500	56.190	5.03e-74	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi05g1877		AP2	3.2e-14	CL0081