Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1873 ATGGCTATACCTACCATCTTCTTCTTCGTCCTTCTCTTGCTTCCACCTAAATTGGCTTTTGCAAACATAACTTTGGGTTCAACCCTCTCCACCAATGATAAAAACCCTCTATGGCTTTCATCTTCTACCGATTTTGCCTTTGGATTTCGCCAAATCAACAATACAAACCTCTTCTTGCTCGCCATCTGGTTCAACAAAATTCCTGACAAAACCATCGTGTGGAATGCAAATATTTCCAATCCGGCACCACAAGGATCGCGGGTTCGGCTCACGATAAGGGGCCTCACACTCACTAATCCCCAAGGCAAAGCTATATGGACAGCCGAACCAGTGCAAGATGTGTCTTACGGAGTTATGCTTGATACTGGGAATTTTGTTCTGGCAAGCACTAATTCTTCATATTTGTGGGAAAGTTTCGAGAATCCCACTGACACTCTGTTGCCTACCCAAAATTTGGAACTAGACGCTAAGCTGCATTCTCGATTGACAGCGACCAATTACACAAAGGGAAGGTTTGAGCTTTATTTTGATAACGGAAATCTCTTGCTAAGTCCTATTGGTTGGCCATCTGAATCTCGTTACACCAATTATTTTAGTGTCAACACAAGTTCTGCAGCCAAACTAGTCTTCGATAATTCGGCGGATATTTATGTGGAGACAAGGAATGGAGATAGAATACAACTTGAATCAGGATGGAACAATTCAGCCACTGATCCTGACAGATTTTACTACAGAGCTACACTTGATTTCTATGGAGTTTTTACCCAGTATTCTCATCCAAGGGGATCCGATGGCGACCAAGTTTGGTCCGTTGTGAAGTATGTTCCCAACAACATTTGCCTTGCCATATTTAGTGATTTGGGTAGCGGTTGTTGTGGGTACAATAGCTACTGTTCCTGGGAAAAGACAAGGCCTACTTGCAATTGCCCAGATGGGTATTCGCTTGTAGATCCAAACAACGAATTTGGAGGATGCCAACCCGATTTCTCCCTAGGTTGTGGAGCAGATGATGCAGGATCACACGAAAAGCCCGAACAGGTATTTGAGTTTAAGGTTCTGCTAAACGTGGATTGGCCTTTGGGAGATTATGAAAGCCTGTCCAATTATACTCAAGATGAATGTCAAAAATCTTGCTTGCATGATTGTTATTGTGCTGTTGCCATTTTTGACAACGAAAATACTTGTTGGAAGAAAAAACTACCCCTTTCTAATGGAAGATCAAACATAGGCGGTGGTCAAACGCCTCTCATCAAAACAAGAATTCTCCCACTGCCAAACAAGGAACATCCAGTTCAGCCCATTCTTTTAGGGTCCCTTATTGGTTCCCTTGTCATTAATACTACCCTTGTAGCTACAGTTGTTTTGATTCTTCTATTCAAGCCAAAAAAGACTGCCCAAGGGTCAATTATTGTAGAAGCAAATCTGCACTCGTTTACTTATGAAGCACTGAAAGAGGCAACGCAGGGGTTCAATGAAGAAGTAGGGAGGGGTTCCTTTGGCATTGTGTACAAAGGCACCCTGAAGTCAGGAACTAGTAATGTTGTTGCCGTGAAGAGGTTGGACAGATTGGCTCAAGAACGGGAGAAGGAATTTAGGACAGAGTTGAGTGCCATTGGGAAAATATGCCACAGAAATTTGGTTCGGTTGATTGGTTTTTGCGAGGAGGGAGTTCATAGACTTCTGGTCTACGAGTTCATGACCAATGGTTCCCTAGCAGATTTCCTCTTTGGACAACCCAAACCAATTTGGAATTTAAGGGTTGGATTTGCATTGGGGATTGCAAGAGGGCTGTTGTACTTACACGAGGAGTGTGACACTCCCATCATTCACTGTGACATAAAACCTCAAAATATACTGATAGATGAACATTTCACAGCAAAAATCTCTGATTTTGGGTTGGCCAAGTTGTTGTCGTCTGATCAGAGCCGAACCAAAACCATGATCAGAGGAACAAGAGGATATGTAGCGCCCGAATGGTTCAAGAATGTGCCAGTAACTGCTAAAGTAGATGTGTATAGCTTTGGTGTAATGTTGTTAGAGATCATTTGCTGCAGAAGAAGTGTGTTGATGGATACTGACGAGGAAGAAAAGGCGGTGCTAACAGATTGGGCTTATGATTGCTATATGGAAGGGAGAATAGATGCTCTGGTGGAGAACGACAGGGAGGCTATCGGTGACATAGGCAGGCTAAACAAGTGGGTGATGATAGCAATGTGGTGCATTCAGGAGAAACATGAAATAAGGCCTACGATGAAGACTGTCGTGCTAATGTTGGAAGGCGTCCTTCACGTCCCAAATCCACCATCGCCTTCCTCCTTCACCACCTTTACTTCTCGGCCGTTCCCTGTTACGTAG 2355 0.4361 MAIPTIFFFVLLLLPPKLAFANITLGSTLSTNDKNPLWLSSSTDFAFGFRQINNTNLFLLAIWFNKIPDKTIVWNANISNPAPQGSRVRLTIRGLTLTNPQGKAIWTAEPVQDVSYGVMLDTGNFVLASTNSSYLWESFENPTDTLLPTQNLELDAKLHSRLTATNYTKGRFELYFDNGNLLLSPIGWPSESRYTNYFSVNTSSAAKLVFDNSADIYVETRNGDRIQLESGWNNSATDPDRFYYRATLDFYGVFTQYSHPRGSDGDQVWSVVKYVPNNICLAIFSDLGSGCCGYNSYCSWEKTRPTCNCPDGYSLVDPNNEFGGCQPDFSLGCGADDAGSHEKPEQVFEFKVLLNVDWPLGDYESLSNYTQDECQKSCLHDCYCAVAIFDNENTCWKKKLPLSNGRSNIGGGQTPLIKTRILPLPNKEHPVQPILLGSLIGSLVINTTLVATVVLILLFKPKKTAQGSIIVEANLHSFTYEALKEATQGFNEEVGRGSFGIVYKGTLKSGTSNVVAVKRLDRLAQEREKEFRTELSAIGKICHRNLVRLIGFCEEGVHRLLVYEFMTNGSLADFLFGQPKPIWNLRVGFALGIARGLLYLHEECDTPIIHCDIKPQNILIDEHFTAKISDFGLAKLLSSDQSRTKTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGVMLLEIICCRRSVLMDTDEEEKAVLTDWAYDCYMEGRIDALVENDREAIGDIGRLNKWVMIAMWCIQEKHEIRPTMKTVVLMLEGVLHVPNPPSPSSFTTFTSRPFPVT 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1873 784 Gene3D - 141 271 IPR036426 -
Glsi05g1873 784 Gene3D Phosphorylase Kinase; domain 1 455 565 - -
Glsi05g1873 784 Pfam PAN-like domain 350 397 IPR003609 -
Glsi05g1873 784 ProSitePatterns Protein kinases ATP-binding region signature. 494 518 IPR017441 GO:0005524
Glsi05g1873 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 766 - -
Glsi05g1873 784 PIRSF SRK 1 782 IPR024171 GO:0004674
Glsi05g1873 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Glsi05g1873 784 SUPERFAMILY Protein kinase-like (PK-like) 467 759 IPR011009 -
Glsi05g1873 784 FunFam S-receptor-like serine/threonine-protein kinase 459 565 - -
Glsi05g1873 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 18 140 - -
Glsi05g1873 784 Pfam D-mannose binding lectin 71 160 IPR001480 -
Glsi05g1873 784 CDD STKc_IRAK 494 760 - -
Glsi05g1873 784 CDD PAN_AP_plant 329 419 - -
Glsi05g1873 784 Gene3D - 20 139 IPR036426 -
Glsi05g1873 784 Pfam Protein kinase domain 491 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1873 784 ProSiteProfiles Protein kinase domain profile. 488 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1873 784 SMART serkin_6 490 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1873 784 Gene3D Transferase(Phosphotransferase) domain 1 566 776 - -
Glsi05g1873 784 ProSiteProfiles Bulb-type lectin domain profile. 22 140 IPR001480 -
Glsi05g1873 784 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 770 - -
Glsi05g1873 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 182 IPR036426 -
Glsi05g1873 784 SMART blect_4 26 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1873 Glsi-ChrGlsi05 66220102 66222456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1873 473 760 Receptor kinase-like Gene Family AT1G60800 42.712 9.67e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi05g1873 Pkinase 1.9e-48 CL0016