Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1854 ATGGGCAAGAATGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACACTTGCAAATTATACCCCGTTACATGCTCGGGCAGAAACGGATAATTATGAGGATCAAAGGGTTTCAAGGGTAAAGAGCTTACCATTAAACAAGAACAAAGAAGTGAAATTGCCCAAACGAAAGCATAATCAAGATAATGTATTGTCTGGAGTGGTTGCCCCTGATTACAACCAGGGGTTCAGAAAGGTTATAGATGAAGATACAAGCAATAGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCCCAATTTGGTGGCACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAATTGTCTGGGATGCCACGGTGCCTTCAAAAAAGAGGACATGTGTGAGTCGTCCAAAGCAATCATCTGTTGAGAAGCTCACAAAAGATCTATACACTATTCTTCATGAACAACAATCTTATTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAATGAAATACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCAAGCTCTATAGCTCGGGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAACAAACAATGGCCAATGGGTGAGGCATATTCATGTTCTGGTGGCACTTCTGTGTATAATGATTTTAGCGGCGTAAACTTCCCATCTCAGGGAGTTCTAAAGATCAGGAGCTCTGCTGGTCAAGGAATGCAGCAGGAGCAACTTAAAAGGGACAAGACTCAGCATGAAAAGGCACAAATTCTTGGAAATCATAAGTCACCACTGTGCTTAGTAGATTTAAATGATGTTATAAGCTATGATGAATTTATGAGAAGCTTGACAAATGAAGAGCAGCAACAATTACTCAAGTGTCTCCCGGTGGCTGACACTGCTAAACTTCCTGAAAGCCTTAAAAGCATGTTCAGTAGTCGTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGTGTCTTTGATATCTCCTTATCCGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTATCCAATCTGTCAAAGTCGAAATGGGTGGAACACTATAATTTACTAAAGAAATGTAAAAACAGAACTGGAAAATCTGTTGATCTGGGATCTACTGGCACTGCATCAAGTAATGTTGCAAATGTCAAGAGATATCATGACAGCCAAAATCAAAAGTTTTCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCGTGAAGGCTGGCTGTGAGGGCAAGGAAGCTGAAGAATATGGCTCTTGCTTCAGTCCAAAAACCCTATTTGCTTTGCCTCCTGATGGTGACTCGCTCATGCTGGATTCTTTCAAATTTGTTGAGGAGAGTTCTGATCAGGATCTACTGCTAGAGGTGCCATCTAACAGTTCTTTTCCTCAGGCAGAGCTCCTGCACCCAACTTTAAGCTTTTCTGCTCAAGCCAGCACCAGCAGTAGCACAGTATACCCACATCTTGTTCATCCTTGA 1623 0.427 MGKNGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDNYEDQRVSRVKSLPLNKNKEVKLPKRKHNQDNVLSGVVAPDYNQGFRKVIDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDATVPSKKRTCVSRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFENEIPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQWPMGEAYSCSGGTSVYNDFSGVNFPSQGVLKIRSSAGQGMQQEQLKRDKTQHEKAQILGNHKSPLCLVDLNDVISYDEFMRSLTNEEQQQLLKCLPVADTAKLPESLKSMFSSRQFKENLTYFQQLLAEGVFDISLSGAKPEDCKTLKRLALSNLSKSKWVEHYNLLKKCKNRTGKSVDLGSTGTASSNVANVKRYHDSQNQKFSELKTTMRSPKRVIVKAGCEGKEAEEYGSCFSPKTLFALPPDGDSLMLDSFKFVEESSDQDLLLEVPSNSSFPQAELLHPTLSFSAQASTSSSTVYPHLVHP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1854 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Glsi05g1854 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Glsi05g1854 540 Gene3D - 286 386 IPR038108 -
Glsi05g1854 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Glsi05g1854 540 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Glsi05g1854 540 FunFam GATA transcription factor 27 3 85 - -
Glsi05g1854 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Glsi05g1854 540 Gene3D - 4 87 IPR013088 GO:0006355|GO:0008270
Glsi05g1854 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 46 - -
Glsi05g1854 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Glsi05g1854 540 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Glsi05g1854 540 Pfam Asx homology domain 281 367 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1854 Glsi-ChrGlsi05 66109475 66115917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1854 1 517 C2C2-Gata Transcription Factor Family AT4G17570 54.753 1.99e-170 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi05g1854 ASXH 4.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1854 05 66109475 66115917 Glsi09g0238 09 1726888 1733120 CCT