Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1852 ATGCTGCATTCAAAGTCGTTAACAATGGTTACATCACTCAATAACAGTAATAACGAGGGAAGAACTGGGAAGCCACGGATGGAAAATGGGGATTGCAATGTACTTGCTCAGCCCATTTATAAGCGGCGCAAAGTTTCCGCCATTCGCGATTATCCAGCAGGATGTGGACGATTAATGACCAGAATTGATTTAATGCCAAACGTTGATACTGCTAAAGGTACAATTGTCGAGGATGAGAGTGGTAAAGATGCAAAGGATGAATTTGTTAGAACTTCCAAGCTTGAAGATGAACCCCAAAATTCTGAGTTTTTAAATTGTTCGTTTTCTACTGAGACTATTGGACAGACAAATGAATATAGTGTGAAGAAGGAAATTTCAATGGTCTCACCTAATCATGTGGATGAGGCTCCTTTGACAAATGAGGAACCTGTAAAAATGCATTTGGTGGGCTTGGAAGATTTAGAGAATACGGAGCTGACAAGAACTGCAGAACCTGTAAAATTGGATTCCTCTAGTATGTCAAAAGACTTGCTTAAAATGGGCCCTTCTTCTCCCGAGGGTGAGGTGGTTTTGTCAAGTAGTTCAAAATTCTTGTCACTAGATGCCAATATAGCTGGTTCCAATGATTGTTTGGAGAAGGCTATAACTAGAAGGCATTCTCGTCAAAGACGGGTTTCAGCCATTAGAGACTTTCCCCCTTTATGCGGACGAAATGCTCCATGTCTCAATAAGGATGAGTGTTTAGAGGGTGTCTCTTTTCTGGATAACATGAGAATGGGTCAACAGGACTTGGCTGTAGATGATAAAGCCTTCAAAAAAGCAGTAATTTCTGATGTAAAAGAAGTGAAAAAGATTGTCAAATATGGAGATGCTGGCAACAGCGGGCTAGCGGACATTTTTCAGGGTGATTTTAAAGAGAATGCTGGACAGGAAGTGAAAAATTCGGATGAATCTAGACCATCTTCTGAGATAAAATTTCCACCAAAAGATACAAGAGATCAGTGTGTTGCACTTTCTGATGAAAGTAATCACCGTCAGGTTGTAATAAATTCGTCGTCACTAGTTAAAGAAGAAAGCAGTGGTGCGGTACAGTTTGAGGGAACATCAGGGAAGGAGATTGTAGTTTATTCAGGAGTCCAAAGTCGTGAGATGAAGCCCTTGGGCATATCTGGTACTCACCGCAAGTTGAAAGGAGGTTTTAATGGATTGCAGACTTCATCTGACAGGATAACTGTGCTAGGTTTGATGTCTGAATCAGAATGTCCTTGGAGGAATGGTAAAGGTTCTTCCAAATTTAATATGATTGATGACACAAATGAAAGAAAGGGAAAGAAAGTTGATTTTTTCCCATGGCTTGACAGATCTAAAGCTGCTATCAAGAACAAGGACTCACCAAATTATTCTAGGAAGAAGCCTTTGAAAAAGAAAAAAGGAAACTGCGCTTCTGAAGATATGGGTCAACTAGTAATTTGGGAAGAGAAAAATCCTCTTGACCATAATAAAAATATGGAAGAGTTATGTGTTTTCCCTATATCATATGGTCATGTAATTGTTCCTCCTCTTGGTCATGGTAATCCGAGTGGTCATTACAATGACTCGAGTGTGACCCGAAATAAAGTGAGGGAGACACTGCGCCTGTTCCAAGCTGTTTCTAGAAAGCTTCTGCAGGAGGAAGAAGCAAAGTTAAAAGACCGAGCAAACCCTTATAGAAGGATTGATTTACAAGCAGCTAAGATCCTTAAGGAGAAAGGAAAATATGTTAACACAGGGAAGCAGATCTTGGGACTGGTCCCCGGGGTTGAAGTGGGTGATGAATTTCAGTATAGGGTGGAGCTTAATATTATTGGTCTGCATCGCCAGATCCAGGGTGGCATAGATTATGTGTTACATAATGGTAAGATCCTTGCAACTAGTGTTGTTGCTTCTGGGGGCTATGCTGATGAGTTGGATAATTCAGATGTCTTGATTTATACAGGGCAGGGGGGAAATGTGATTAAAAATGATAAAGAACCTGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAGGAACAGTTTTGATGAAAAGAATCCTGTTAGGGTGATACGTGGCTCTGAGTCAATGGATGGAAAGTTTAAGAGATATGTTTATGATGGGCTGTATGAAGTTGAGACACATTGGCAGGATATGGGGCCACATGGTAAGTTGGTTTTTAAGTTTCGGCTGCGAAGAATCCCAGGTCAACCCGAACTTGCTTGGAAAGAAGTAAAGGAATGCAAAAAATTCAAAAGAAGAGAGGGTCTATGTGTTGAAGACATTTCTAGTGGAAAAGAGCCAATTCCAATATGTGCTGTGAACACAATTGATGACGAAAAACCTCCGCCATTTGAATACACAACTAGAATGATATATCCTAATTGGTGCAATCCCATACCTCCAGAGGGATGTAGTTGTAATAATGGATGCTCTGACTCGGAGAAATGTTCTTGTGCAGTCAAAAATGGGGGAGAGATCCCATATAATCATAATGGGGCTATTGTAGAAGCAAAGCCTCTTGTCTATGAGTGTGGTGCTTCTTGTAGGTGCTCTTCAACATGTCATAACAGAGTCAGCCAGCATGGTATAAAATTTCAACTCGAAATATTTAAAACCAAGACAAGAGGATGGGGTGTGAGATCCCTAAATTCCATCCCTTCGGGAAGTTTTATCTGTGAATATATAGGAGAGCTTCTTGAAGAGAAGGAAGCGGAACAAAGAACTGGTAATGACGAGTATCTGTTTGATATTGGGAATAACTATACCAATACTCTTTGGGATGGACTTTCGAGCCTAATGCCTGATGCACAGTCAAGTTCTTGTGAAATTGTGGGGAATGGTGGCTTCACCATTGACGCTGCCCAGTATGGTAATGTTGGGAGATTTATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAAAATGTCCTTTATGATCATGATGACAAGAGGATACCTCACATAATGCTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTATCTTATGATTACAATTATATGATAGATCAAGTCCGTGATTCTGATGGCAATATAAAGAAGAAGGATTGCTTTTGTGGTTCTGTGGAGTGTACTGGTAGGATGTATTGA 3132 0.4055 MLHSKSLTMVTSLNNSNNEGRTGKPRMENGDCNVLAQPIYKRRKVSAIRDYPAGCGRLMTRIDLMPNVDTAKGTIVEDESGKDAKDEFVRTSKLEDEPQNSEFLNCSFSTETIGQTNEYSVKKEISMVSPNHVDEAPLTNEEPVKMHLVGLEDLENTELTRTAEPVKLDSSSMSKDLLKMGPSSPEGEVVLSSSSKFLSLDANIAGSNDCLEKAITRRHSRQRRVSAIRDFPPLCGRNAPCLNKDECLEGVSFLDNMRMGQQDLAVDDKAFKKAVISDVKEVKKIVKYGDAGNSGLADIFQGDFKENAGQEVKNSDESRPSSEIKFPPKDTRDQCVALSDESNHRQVVINSSSLVKEESSGAVQFEGTSGKEIVVYSGVQSREMKPLGISGTHRKLKGGFNGLQTSSDRITVLGLMSESECPWRNGKGSSKFNMIDDTNERKGKKVDFFPWLDRSKAAIKNKDSPNYSRKKPLKKKKGNCASEDMGQLVIWEEKNPLDHNKNMEELCVFPISYGHVIVPPLGHGNPSGHYNDSSVTRNKVRETLRLFQAVSRKLLQEEEAKLKDRANPYRRIDLQAAKILKEKGKYVNTGKQILGLVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYVLHNGKILATSVVASGGYADELDNSDVLIYTGQGGNVIKNDKEPEDQKLERGNLALRNSFDEKNPVRVIRGSESMDGKFKRYVYDGLYEVETHWQDMGPHGKLVFKFRLRRIPGQPELAWKEVKECKKFKRREGLCVEDISSGKEPIPICAVNTIDDEKPPPFEYTTRMIYPNWCNPIPPEGCSCNNGCSDSEKCSCAVKNGGEIPYNHNGAIVEAKPLVYECGASCRCSSTCHNRVSQHGIKFQLEIFKTKTRGWGVRSLNSIPSGSFICEYIGELLEEKEAEQRTGNDEYLFDIGNNYTNTLWDGLSSLMPDAQSSSCEIVGNGGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHDDKRIPHIMLFAAENIPPLQELSYDYNYMIDQVRDSDGNIKKKDCFCGSVECTGRMY 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1852 1043 ProSiteProfiles Post-SET domain profile. 1027 1043 IPR003616 -
Glsi05g1852 1043 ProSiteProfiles Pre-SET domain profile. 808 868 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi05g1852 1043 SMART set_7 871 1019 IPR001214 GO:0005515
Glsi05g1852 1043 Pfam SAD/SRA domain 594 742 IPR003105 -
Glsi05g1852 1043 Pfam SET domain 882 1013 IPR001214 GO:0005515
Glsi05g1852 1043 Gene3D SET domain 759 1043 IPR046341 -
Glsi05g1852 1043 ProSiteProfiles SET domain profile. 871 1013 IPR001214 GO:0005515
Glsi05g1852 1043 SMART PostSET_3 1027 1043 IPR003616 -
Glsi05g1852 1043 Gene3D - 576 758 IPR036987 -
Glsi05g1852 1043 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 440 1043 IPR025794 GO:0016571
Glsi05g1852 1043 Pfam Pre-SET motif 767 863 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi05g1852 1043 SUPERFAMILY PUA domain-like 576 751 IPR015947 -
Glsi05g1852 1043 CDD SET_AtSUVH-like 788 1014 - -
Glsi05g1852 1043 SMART preset_2 764 855 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi05g1852 1043 SUPERFAMILY SET domain 754 1014 IPR046341 -
Glsi05g1852 1043 MobiDBLite consensus disorder prediction 1 23 - -
Glsi05g1852 1043 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 388 1036 - -
Glsi05g1852 1043 SMART G9a_1 590 742 IPR003105 -
Glsi05g1852 1043 MobiDBLite consensus disorder prediction 1 30 - -
Glsi05g1852 1043 ProSiteProfiles YDG domain profile. 595 738 IPR003105 -
Glsi05g1852 1043 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1852 Glsi-ChrGlsi05 66094708 66097839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1852 537 1040 Su(var)3-9 homologs AT5G04940 41.731 5.95e-122 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g1852 SAD_SRA 1.4e-49 CL0178