Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1827 ATGGGAAAATCACATAGGAAAGACTCTTGCACTTTGGACCATGACCATGTTGATTACTCTGTCTTTAAGCATCAAATCACTGGTTGTGATGACTGTTCTGGCTATGATCCCTGTAGTTCCACTGGAACAGTGTGGGATATAATTCCTGGAGTCAATAAGAGTATGTACCCTCATCAACGCGAAGCTTTTGAATTTCTTTGGAGGAATTTAGCTGGTGGAATTCTTCTTGAGGAGTTGAAAGAGCAATCAGAGTTTCCTGGTGGAAGTGGTTGCATTATATCACATGCTCCTGGCACCGGGAAAACCCGTCTTACTATTGTATCTCTGCAGACATTCATGGAGTTATATCCAACTTGCAGACCAATGATCATTGTTGCTCCCAGCAACATGCTCCTTACATGGGAAGAGGAGTTCGAAAAGTGGAAGATTGGAATTCCTTTTCACAATTTGAACAACCCTGGGTACTCTGGCAAGGAGAGTGAGGCGGCTATGAGCCTTCTGAGGCAATCTGGTTGCTATGAGCACGGCATAAACTCAATCCGTATAGTGAAGTTGTATTCCTGGAAAAAGGATAGAGGCATCTTGGGAATTAGCTACACATTGTTTGAGAAACTTGCTGGACAGAGCTCTGTTGAGAAGGATATAAGAAAAGCCCTTCTTGAGCTTCCTGATTTATTAGTTCTTGATGAGGGTCACACCCCTCGCAATGCCCAAAGTCTTGTATGGAAAGCTTTGTCAGAAATCAAGACCAAAAGACGCATTTTACTCTCTGGAACACCCTTTCAGAATAATTTCCATGAGCTATATAATACACTCTGCTTGGTGAGGCCAAAGTTTGCAGACTGGAACACTTCCGGAGATAGCGTGGTGGTTGATGAGAAGTTGGGGCGCAGAAAAAATAAAAGCAGAGGGAAATGGGCGCATTTAACCAATTCAATTGGAAAAGTTAACACTGGTAGGGAAAGATATAAGATATTGAAAGAGATCAGAGAAATGATTAACCCATTCGTGCATGTGCACAGGGGTACAATACTGCAAGAGAGGCTTCCTGGGTTGAGGGAGCTGTTAGTCATATCAAGGCCAACCCAGTTGCAAAAGGAACTTCTTGAGGATATTCAGAAGACAAGGAAAAGCCACTTGCAGGGCAATGAGGGGTCCTCGAATCTGCTTAAATTAGAACATTTGGAGTCTTTAACTGCTGTGCATCCTTCACTCTTGCTTGTATCTAAAGAGAAGAAGTTAGAAGGGGTGAGATTGAATCCTGAGGATGGAGTGAAAACGAAATTTCTAATGGAACTCATCCGGCTTAGTGAGCTTATGAATGAAAAAGTTTTGGTTTTTAGTCAGTTTATTGATCCCTTGACATTTCTGACAGACCAGCTTAAATCTCATTTTAGTTGGACTGAAGGAAGGGAGATGTTGCAAATGCACGGAAAATTCGATGTAAAGATTCGTCAAACTTCAATCAGAGCTTTCAATGATCCCAGTAGCAAAGTAAGGGTATTACTAGCATCAACCAAGGCTTGCTTTGAAGGAATCAATTTGGTTGGTGCTTCAAGGGTTGTTTTACTTGATGTTGTATGGAATCTTTCGGTGGAAAGGCAGGCAGTAAGAGGTGCTTATCGACTTGGACAGAAGAAAGTTGTGTACACTTACCATCTTATCACCTCAAGGACAAGGGATGAACAAAAATGTTTTCGTCAGGCTGAGAAGGATCAGTTGTCCGAGTTGGTATTCTTCTGTTCCGATGGGGCTAGTCATCAGCAGAATATCTCATCTGCAGACTTCGAAGATAAAATTTTGGAAGAGATGGTTCAAAATGGAAACTACAGACGCATAAATGAACCCGGACGTCAAATGTGTGTCTTTATAGCCCATAGAGAAATAGGGTTTCGCCGACCGTTCCCTCCACTTCCCCTTGATTACCTTCCTTTGTGTCAGACTAAGAGAACCAAGAAGGCAGGCATAGTTGGAAAATATGGTACCCGATACGGGGCTAGTCTGCGAAAGCAGATTAAGAAGATGGAAGTTAGTCAACACAGCAAATATTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGGAAAGCTGTAGGAATATGGGGCTGCAAGGATTGTGGTAAAGTGAAAGCAGGCGGTGCCTACACTTTGAATACTGCCAGTGCAGTGACTGTACGGAGCACCATTCGGAGGTTGAGGGAACAAACTGAGGGCTGA 2217 0.4285 MGKSHRKDSCTLDHDHVDYSVFKHQITGCDDCSGYDPCSSTGTVWDIIPGVNKSMYPHQREAFEFLWRNLAGGILLEELKEQSEFPGGSGCIISHAPGTGKTRLTIVSLQTFMELYPTCRPMIIVAPSNMLLTWEEEFEKWKIGIPFHNLNNPGYSGKESEAAMSLLRQSGCYEHGINSIRIVKLYSWKKDRGILGISYTLFEKLAGQSSVEKDIRKALLELPDLLVLDEGHTPRNAQSLVWKALSEIKTKRRILLSGTPFQNNFHELYNTLCLVRPKFADWNTSGDSVVVDEKLGRRKNKSRGKWAHLTNSIGKVNTGRERYKILKEIREMINPFVHVHRGTILQERLPGLRELLVISRPTQLQKELLEDIQKTRKSHLQGNEGSSNLLKLEHLESLTAVHPSLLLVSKEKKLEGVRLNPEDGVKTKFLMELIRLSELMNEKVLVFSQFIDPLTFLTDQLKSHFSWTEGREMLQMHGKFDVKIRQTSIRAFNDPSSKVRVLLASTKACFEGINLVGASRVVLLDVVWNLSVERQAVRGAYRLGQKKVVYTYHLITSRTRDEQKCFRQAEKDQLSELVFFCSDGASHQQNISSADFEDKILEEMVQNGNYRRINEPGRQMCVFIAHREIGFRRPFPPLPLDYLPLCQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTEG 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1827 738 SUPERFAMILY Zn-binding ribosomal proteins 656 728 IPR011332 GO:0006412
Glsi05g1827 738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 278 IPR014001 -
Glsi05g1827 738 NCBIfam ribosomal protein eL43 649 737 IPR002674 GO:0003735|GO:0005840|GO:0006412
Glsi05g1827 738 FunFam 60S ribosomal protein L37a 648 738 - -
Glsi05g1827 738 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 5 613 IPR044567 GO:0080188
Glsi05g1827 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 579 IPR027417 -
Glsi05g1827 738 Pfam SNF2-related domain 86 390 IPR000330 GO:0005524|GO:0140658
Glsi05g1827 738 Gene3D - 647 738 IPR011331 GO:0003735|GO:0005840|GO:0006412
Glsi05g1827 738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 432 592 IPR001650 -
Glsi05g1827 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 280 IPR027417 -
Glsi05g1827 738 Gene3D - 350 621 IPR027417 -
Glsi05g1827 738 SMART helicmild6 455 544 IPR001650 -
Glsi05g1827 738 SMART ultradead3 51 291 IPR014001 -
Glsi05g1827 738 CDD SF2_C_SNF 426 555 - -
Glsi05g1827 738 Pfam Ribosomal L37ae protein family 650 734 IPR002674 GO:0003735|GO:0005840|GO:0006412
Glsi05g1827 738 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 650 718 IPR002674 GO:0003735|GO:0005840|GO:0006412
Glsi05g1827 738 Pfam Helicase conserved C-terminal domain 428 541 IPR001650 -
Glsi05g1827 738 Gene3D - 39 317 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1827 Glsi-ChrGlsi05 65946018 65950826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1827 649 738 Cytoplasmic Ribosomal Protein Gene Family AT3G60245 94.444 1.44e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi05g1827 SNF2_N 8.2e-23 CL0023