Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1823 ATGGCGGTTGACGCCGACGTGTCTTCCAAGTTTGAAAGGTCTATGGCGTATCCTGAGTCTGTCTTTATCATTCTCTCTCCTTCCCTCCACGCGGTTGTGTTTATCTTCCACAGTTCCTTTCAGAAAATGAAGTGTTTCATCTTCAGAGGAAAAAAAGGACCAAAACCCGATCCAGAATCGCGAAACAAAAGCACGAAGAAAAATCGCGCAGTAAGGGCAACGAGTTCGCTACCATCACCTAGAAGCATAACAGAATTGTACAAAGAGAAAGAGCACAATTTAAGGAATTTCACTTTGCAAGAGCTCGGGGAGGCAACACATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGAAGCGTGTATAAAGGTACAATTAGGCCTCAAGATGGTCGGGGTGATCCAATTGCAGTTGCGATCAAAAGGCTTGACACCCGTGGGTTCCAGGGACATAAAGAATGGCTTGCAGAAGTTCAATTTCTCGGCATTGTTAATCACCCAAATCTGATGAAACTATTGGGATACTGCTCCGTAGATGGAGAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATGCCAAACAGGAGCCTGGAAGATCATCTTTTCAATCGGGCTTTTCCCGCGTTACCCTGGAAAACAAGATTAAAGATCATGCTCGGTGCTGCCCAAGGATTGGCTTATCTACACGAGGGATTGGAGGTCCAGGTAATATACCGAGATTTCAAATCTTCAAATGTTTTGTTGGACACGGATTTCCACCCAAAGCTCTCAGATTTTGGTCTTGCTAGGGAAGGTCCAATAGGCGATCAGACCCATGTATCTACTGCGGTGGTTGGGACATACGGGTATGCTGCCCCAGAATATGTGGAAACAGGCCACCTCAAAGTTCAGAGTGACGTTTGGAGTTATGGTGTGGTACTGTATGAGATGCTCACAGGCAGGCGGGCATTGGATAGAAAACGTCCTACACAACAGAAGCTTCTAGAGTGGGTTAAACAGTATCCTGCTGACAGTAATAGGTTCAGCATGATAATAGACCCTCGACTCAGAAATGAATATTCTGGTGGGGCAGCTAGGAAAATTGCCAAGTTGGCAGACAGCTGCTTAAACAAGAATCCTGAACGGAGGCCATCAATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAGTATTCAGAAACGTCAAACACCACTTCTGGATCATCTCGATCTAAATTGGTTCCGAAAAGCAAATAG 1248 0.4535 MAVDADVSSKFERSMAYPESVFIILSPSLHAVVFIFHSSFQKMKCFIFRGKKGPKPDPESRNKSTKKNRAVRATSSLPSPRSITELYKEKEHNLRNFTLQELGEATHGFNRMLKIGEGGFGSVYKGTIRPQDGRGDPIAVAIKRLDTRGFQGHKEWLAEVQFLGIVNHPNLMKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNRAFPALPWKTRLKIMLGAAQGLAYLHEGLEVQVIYRDFKSSNVLLDTDFHPKLSDFGLAREGPIGDQTHVSTAVVGTYGYAAPEYVETGHLKVQSDVWSYGVVLYEMLTGRRALDRKRPTQQKLLEWVKQYPADSNRFSMIIDPRLRNEYSGGAARKIAKLADSCLNKNPERRPSMSQIVESLKQALQYSETSNTTSGSSRSKLVPKSK 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1823 415 MobiDBLite consensus disorder prediction 51 66 - -
Glsi05g1823 415 Pfam Protein kinase domain 111 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1823 415 ProSitePatterns Protein kinases ATP-binding region signature. 115 143 IPR017441 GO:0005524
Glsi05g1823 415 MobiDBLite consensus disorder prediction 51 77 - -
Glsi05g1823 415 PANTHER OS01G0588500 PROTEIN-RELATED 69 393 - -
Glsi05g1823 415 MobiDBLite consensus disorder prediction 395 415 - -
Glsi05g1823 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Glsi05g1823 415 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1823 415 Gene3D Transferase(Phosphotransferase) domain 1 195 411 - -
Glsi05g1823 415 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 195 403 - -
Glsi05g1823 415 CDD STKc_IRAK 115 391 - -
Glsi05g1823 415 SUPERFAMILY Protein kinase-like (PK-like) 91 389 IPR011009 -
Glsi05g1823 415 Gene3D Phosphorylase Kinase; domain 1 88 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1823 Glsi-ChrGlsi05 65917352 65919883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1823 45 389 Glycoside Hydrolase AT3G07070 41.944 1.86e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi05g1823 Pkinase 2e-47 CL0016