Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1795 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTGCCGAAATAAGAGCAAAGCTTGAGGCCATGGACTATATTGTTTCTACTTTCTGCAATGAGAACGAAGCGTTGTCAGCAATCTCAAGCAGACCCGAAGGCTTCCATGTTGCCATAGTGGAGATTAGTACAGGCGACAGCCAGGGAATTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAGCAATCATTGCCTCAGCACCATGATGAAGTGCATAGCGCTTGGCGCAGTTGAGTTCCTGGGCAAACCACTCTCTGAAGACAAGCTCAGGAATATCTGGCAACATGTGGTTCACAAGGCATTTAATGCTGGGGCAAGTGTCCTGTCTGAATCACTAAAACCCGTCAAAGAATCTGTAGTATCTCTGTTGCAGCTCCAAACAGACAATAGTCAACATGAAAGCAGAATGTCATTAGATTTAGAAAAGGTATCCAGGTTTAGTGAGAACGATCATGAGCAGTCAGTTGGAGGTGATAAATACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGGCTAGGTTACTGGATGATGGAGATTGCCATGAACAGACTAATTGCTTGACTGAAAAAGAAAGTGGAGAACATGACGGGGAATCTAAATCTGTCGAAACTACATGTGGGAATTTGAGTTCAGAAGGTGCTCCTCAACCAAGGAAACCTGAAGAGACTCTGATCAAGGAGGAGGAGGACTTTGCCAATGGTCCCAAGAGTGAGAGTTCTGTTTCTCCACATCTGGATAATAGAAAGTTTCTCAGCAACATTGATGAGAGGACTGCATCTCCAAACAAAGCAGGTGTTCTCAGTGATTCACGTGAGATTAAAGCTAATAGGAAGAAGATGAAGGTAGACTGGACACCTGAGCTGCATAAAAAATTTGTACAGGCAGTGGAACAACTAGGTGTTGATCAAGCCATACCTTCTCGAATACTGGAGCTGATGAAAGTGCAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATTTTGCCCAAGGAAGAAGATCGAAGATGGCCACATCAAAGGAACTATTATGTACCAAGACCGATTATGGCCTTCCCTCCGTATCATTCTAATCACACCCTATCTCCAGCTCCTATGTATCCTATGTGGGGACAATCTGGAAGCCAACCAGCTGGTGTACAGATGTGGGGTCCACCTGACTATCACCTGTGGCAGCCTACAGAAAGTTGGATCTGGAAGCCTTTTCCAGGGATGCATGCAGAAGCATGGGGTTGCCCAGTGTTGCCTCCTCCTCAAGGTCCTTGTTTTTCCCACACTCAACATATGCCTGGATTGCCCTATGCTGATGTAGTTGACCATAGCTCTAGCATGCCACCAAGTTCGTTTGAGCTTCATCCGCCAGATGAGGTTGTTGACAAGGTTGTGAAGGAGGCAATAAACAAGCCATGGTTGCCCTTGCCCTTGGGCCTCAAACCTCCTTCCACGGATAGTGTGTTGGCTGAGCTCTCCAGGCAAGGGATATCCAGTATCCCTCGTGGAAGCAGGGGCTCTAACCCCAGCTGA 1656 0.462 MVCTANDLQGWKDFPKGLRVLLLDGDTNSAAEIRAKLEAMDYIVSTFCNENEALSAISSRPEGFHVAIVEISTGDSQGIFKFLENAKDLPTIMTSSNHCLSTMMKCIALGAVEFLGKPLSEDKLRNIWQHVVHKAFNAGASVLSESLKPVKESVVSLLQLQTDNSQHESRMSLDLEKVSRFSENDHEQSVGGDKYPAPSTPQLKQGARLLDDGDCHEQTNCLTEKESGEHDGESKSVETTCGNLSSEGAPQPRKPEETLIKEEEDFANGPKSESSVSPHLDNRKFLSNIDERTASPNKAGVLSDSREIKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVQGLTRHNVASHLQKYRMHKRQILPKEEDRRWPHQRNYYVPRPIMAFPPYHSNHTLSPAPMYPMWGQSGSQPAGVQMWGPPDYHLWQPTESWIWKPFPGMHAEAWGCPVLPPPQGPCFSHTQHMPGLPYADVVDHSSSMPPSSFELHPPDEVVDKVVKEAINKPWLPLPLGLKPPSTDSVLAELSRQGISSIPRGSRGSNPS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1795 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 311 370 IPR017930 -
Glsi05g1795 551 FunFam Two-component response regulator-like APRR2 17 143 - -
Glsi05g1795 551 SUPERFAMILY CheY-like 16 134 IPR011006 -
Glsi05g1795 551 MobiDBLite consensus disorder prediction 223 255 - -
Glsi05g1795 551 FunFam Two-component response regulator 310 373 - -
Glsi05g1795 551 Gene3D - 12 138 - -
Glsi05g1795 551 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 543 IPR044825 GO:0003700|GO:0045893
Glsi05g1795 551 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Glsi05g1795 551 NCBIfam myb-like DNA-binding domain, SHAQKYF class 314 369 IPR006447 GO:0003677
Glsi05g1795 551 Gene3D - 310 372 - -
Glsi05g1795 551 MobiDBLite consensus disorder prediction 181 205 - -
Glsi05g1795 551 Pfam Myb-like DNA-binding domain 317 366 IPR001005 -
Glsi05g1795 551 SUPERFAMILY Homeodomain-like 313 371 IPR009057 -
Glsi05g1795 551 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1795 Glsi-ChrGlsi05 65627196 65631743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1795 1 545 Response Regulator Gene Family AT4G18020 49.914 2.67e-149 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi05g1795 Response_reg 1.5e-07 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1795 05 65627196 65631743 Glsi09g0275 09 1970911 1980066 CCT