LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g1782	ATGGGTTGCTTACACTCCAAAACGGCTCGTCTCCACTCCCCCGATGACTCCAAAAAACTTGATCCAGCTAATGGAGATGATCTTGATCAAGAATGTCAAGTCCCAGCATTCAAAGAGTTCGGTCTCAATGAACTCCGAAGGGCTACAAATGAGTTCAGCACAGATTACATCGTGTCGGAGAGTGGTGAGAAAGCTCCCAATGTGGTCTACAAAGGAAAGCTCGAGAGCAATCGCTTAGTCGCTGTTAAACGGTTCTCCAAACAGTCCTGGCCTGACGCTCAGCAGTTTATGGCAGAGGCAGCTGGAGTTGGGAAAATGAGGCACAAGAGACTTGTGAATCTAATTGGTTGCTGTGCTGAAGGAGATGAACGGCTCTTAGTGGCTGAGTACATGCCAAACGATACGCTGTCGAAGCATCTCTTTCATTGTACTACTTCATTTCTTCTTATTCAATTTCTCTTGCAATCATTGAAACTTGTTAGTTCTGCATTTGTTTCCTGCACTGCACTTATCCTTCTCGTTATCATAGTTCTACATGTAGTTGTTTGGAAGTCTTGGCAGGCTTTCTTTACCTGCTATTGTCCTTCTGGGCTGATTTTTTGTACAGGGGACAAGCAGCCATTGCCATGGGAAATGCGTGTTAGAGTTGCATACCATGTAGCAGAGGCGCTAGATCATTGTAGCATGGAAAACCGCAAGATATATCATGATTTGAATGCATACAGGATTCTTTTTGATGAGGAAGGTGACCCTCGTTTGTCAAGTTTCGGGCTTATGAAAAATAGTCGAGACGGGAAAAGCTACAGTACTAACTTGGCTTATACTCCACCTGAGTTTTTGCGAACAGGCAGGATTATCCCAGAGAGTGTAATCTACAGTTACGGAACGGTTCTGCTGGATCTTTTGAGCGGCAAGCATATTCCTCCTAGCCATGCTCTGGATCTGATTAGGGGAAAAAATGCGTTGTTGTTGGACTCATCCCTAGAAGGGCAATATGCAAATGATGATGCTACAAAGTGGGTTGAACTTGCTTCAAAATGTCTTCAGTTTGAGGCTAGAGAACGACCAGATATTAAGTTTCTTCTTACAGCAGTTGCACCTCTTCAAAAGCAGAAAGAGGTAGCATCTCATGTATTGTTGGGCCTCAATAAAAACACAGTAGTGCTGCCAACCATGCTTTCTCCTTTAGGAAAGGCTTGTGCAAGGATGGATCTCACGGCTGTGCATGATATATTGTTAAAAATAGGTTATAAAGACGAAGAAGGTGCAGAGAATGAGGTTGGTTCATGTAGTTATTGCGGAGAAAGCAGTACTCTAATTAGGATATGTCATGTGAATATGCAAACAAACGAGGTTGTGTCAATTTACTATAATACTGTGGATGAATCTGATTTTCCCTTATTTCTTTCATTCCAAGAGTGGACACAACAAGTGCAAGAGATCTTGAACACAAAAAAATTTGGCGATATTGCATTTAGAGACAAGGATTTCAAAAATGCAATTGAATATTATTCTAAGTTGGCGGTTATGATGTCTGTTCCTTCGGCTACGGTGTTTGCAAGGAGATGCTTCTCGTACTTGATGAATGAGCAGGCAGAACTTGCCTTGAGGGATGCCATGCAGGCTCAGGCGTGCATACCTGATTGGCCAACTGCATTCTATCTGCAGGCTCTTGCACTATCGAAGCTGGGAATGGAAACTGATGCACAGGACATGCTTAATGATGGAGCAGCCTTTGAAGCTAAGAGGTCTAACAGTTGGCGTGGAGAGGCTCGAGGGCGAAGACGCGTTCCTGAATACCAAGAGCTCAAGGAAAAAGATAAAATTTATATGGATAGCAAGAAGACGATTAAGGAGGTTGCACGTGAGTTGCTTATTGCTATCTCTAACTCTTCACCTGATAAGGTTGGGGATTCAAAGTGTGGGTCTGAAAGCAAGAAAGCAGATGAGGTTGCAGTGTCGAACGGAGATGGGGCTGACAAGCTTCGATCTGAACTGATTTCAATCTCATATGTGGAATCTCCTGATGTCAAAATCTGA	2040	0.4338	MGCLHSKTARLHSPDDSKKLDPANGDDLDQECQVPAFKEFGLNELRRATNEFSTDYIVSESGEKAPNVVYKGKLESNRLVAVKRFSKQSWPDAQQFMAEAAGVGKMRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHCTTSFLLIQFLLQSLKLVSSAFVSCTALILLVIIVLHVVVWKSWQAFFTCYCPSGLIFCTGDKQPLPWEMRVRVAYHVAEALDHCSMENRKIYHDLNAYRILFDEEGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNALLLDSSLEGQYANDDATKWVELASKCLQFEARERPDIKFLLTAVAPLQKQKEVASHVLLGLNKNTVVLPTMLSPLGKACARMDLTAVHDILLKIGYKDEEGAENEVGSCSYCGESSTLIRICHVNMQTNEVVSIYYNTVDESDFPLFLSFQEWTQQVQEILNTKKFGDIAFRDKDFKNAIEYYSKLAVMMSVPSATVFARRCFSYLMNEQAELALRDAMQAQACIPDWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRSNSWRGEARGRRRVPEYQELKEKDKIYMDSKKTIKEVARELLIAISNSSPDKVGDSKCGSESKKADEVAVSNGDGADKLRSELISISYVESPDVKI	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g1782	679	MobiDBLite	consensus disorder prediction	633	655	-	-
	Glsi05g1782	679	MobiDBLite	consensus disorder prediction	639	655	-	-
	Glsi05g1782	679	Gene3D	Phosphorylase Kinase; domain 1	27	130	-	-
	Glsi05g1782	679	FunFam	probable serine/threonine-protein kinase At4g35230	479	588	-	-
	Glsi05g1782	679	PANTHER	SERINE/THREONINE-PROTEIN KINASE BSK5	17	584	IPR045845	GO:0004672\|GO:0009742
	Glsi05g1782	679	ProSiteProfiles	Protein kinase domain profile.	55	380	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi05g1782	679	FunFam	probable serine/threonine-protein kinase At4g35230	27	130	-	-
	Glsi05g1782	679	MobiDBLite	consensus disorder prediction	9	25	-	-
	Glsi05g1782	679	FunFam	probable serine/threonine-protein kinase At5g41260	198	382	-	-
	Glsi05g1782	679	Gene3D	Transferase(Phosphotransferase) domain 1	198	383	-	-
	Glsi05g1782	679	SUPERFAMILY	Protein kinase-like (PK-like)	38	364	IPR011009	-
	Glsi05g1782	679	SUPERFAMILY	TPR-like	484	601	IPR011990	GO:0005515
	Glsi05g1782	679	Pfam	Protein tyrosine and serine/threonine kinase	68	362	IPR001245	GO:0004672\|GO:0006468
	Glsi05g1782	679	Gene3D	Tetratricopeptide repeat domain	479	590	IPR011990	GO:0005515
	Glsi05g1782	679	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g1782	Glsi-ChrGlsi05	65545725	65555514	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g1782	39	396	Receptor kinase-like Gene Family	AT4G11490	24.737	6.58e-28	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XII-1	Glsi05g1782		PK_Tyr_Ser-Thr	1.8e-25	CL0016