Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1774 ATGGGAGGAGCATCGCTGCCGCCAGGTTTCCGTTTCCATCCAACGGATGAAGAATTGGTAGGATATTATCTGAAAAGAAAAGTAGAGGGTCTCGAAATCGAGCTTGAAGTTATCCCCGTGATCGATTTGTACAAATTCGATCCATGGGAGTTGCCGGAGAAATCATTCCTACCAAGAAAAGATTTGGAATGGTTTTTCTTCTGTCCCCGCGATCGGAAGTACCCGAATGGATCCAGAACGAATAGAGCAACCAAAGCTGGCTACTGGAAAGCCACCGGAAAAGACAAGAAGGTCGTCTGCCACTCTACTCCTTCCACTGCGACAGGATACCGGAAGACTCTGGTTTTCTATCGTGGAAGGGCTCCTTTAGGGGATCGAACGGACTGGGTCATGCATGAGTATCGCCTCTGCGATGATCGTGCCCAAGGATCACCAAGTTTTCAGGGTGCTTTTGCTCTGTGCCGAGTTATTAAGAAGAAAGAGAAGGTAAATGATTCCAAGGGAGAACAGAAGGGCGAAAAAGCTGGAAGCAGTTCTGCCAACGGGAATGACACTTCAACGAGAATCTCTGATGAGCATTTCAGCATCTCTGGTGACGTCTCAAGTCATCTCTACAATGAGAGTCGTTATTCAAGCCCTATTACTTCTCCATACAATGTGGTTCCGACCGCAGAGTTTGAGCAAGCTTCCATGGAAATTGACCCTTCAAACATCTGGATCTCTCCAGATTTTATTCTTGATTCTTCAAAGGACTACCCTCAAGTACAAGAATACTATCCACGGTATGATTTATCAAGCTCAATGACACCAGGGCAGCCACTGGAAAACACAGAAATTTCATCCAGTTCATCCTACTCAAATTTCAACGGGGAAATTGAATTTGCTGATGATCTTTATCGAATTGGCTGCATGTCACCGTACTCAGGACAAGGAAACTTCATGGACATTTATGGAAATGAAAATGTGTCATTTGAAGCTTTTGATCAAATCAATTCAATCACATACCCAAAACATTTCTGA 1020 0.4441 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPRKDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCHSTPSTATGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDRAQGSPSFQGAFALCRVIKKKEKVNDSKGEQKGEKAGSSSANGNDTSTRISDEHFSISGDVSSHLYNESRYSSPITSPYNVVPTAEFEQASMEIDPSNIWISPDFILDSSKDYPQVQEYYPRYDLSSSMTPGQPLENTEISSSSSYSNFNGEIEFADDLYRIGCMSPYSGQGNFMDIYGNENVSFEAFDQINSITYPKHF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1774 339 MobiDBLite consensus disorder prediction 173 190 - -
Glsi05g1774 339 MobiDBLite consensus disorder prediction 163 190 - -
Glsi05g1774 339 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Glsi05g1774 339 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Glsi05g1774 339 FunFam Nac domain-containing protein 86 15 162 - -
Glsi05g1774 339 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Glsi05g1774 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 215 - -
Glsi05g1774 339 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1774 Glsi-ChrGlsi05 65495299 65496831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1774 1 293 NAC Transcription Factor Family AT4G17980 56.522 6.80e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi05g1774 NAM 1.4e-38 No_clan