Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1772 ATGGGTTGCACTGTAAGGGAAAAACACATCCGAGCGAATCGGAGACCTCGATCAGTCAAACCCGATACAGACTTCTGTTGTCTAGACCGATTTTCAATCTCCAAATCTATACTGGAATCAGGCCTCATGCCGTTGAAATACCACCTGGGTCCCAACGATTCAGCTCAAAATCCAAATCCTAATTCAAACCCAAACCTTAACCCTACCCCTAATATGGAGGAAAGCGGTTGGGGTTACTGCACAGAAGAACAATTAGAAGAAATTCTTTTGAAAAACTTGGAATTTTTGTACAATGAAGCTGTATCGAAGCTTGTTGCATTGGGGTACGATAATGACGTTGCTTTAAAAGCAGTATTGCGAAATGGGCATTGTTATGGTGGGATGGATGTGTTGACAAATATATTGCATAACTCTTTGGCATATTTAAATAGTAATTGTGGTGGTGGTAGTAGTAGTAGTAATGACAATTTGGATGAGTCCGAGCCTGTTTTCTTTGACTTGAGGCAGTTGGAGGAGTACTCCTTAGCCGGTATGGTCTGCCTCTTGCAGCAAGTAAGGCCACATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTCATGAGTGATCTTCATGTAGGAAGGGCGAGCACTATGGAAATCCCGGTGCTTCCTGTGCCAAGCGATGGTTGTCCTGCTTCTACTACAGTTGATACTGTTTGCAATTCAGGTGGTGTTATGGCCGCTCCATGTAGGTTTCACGGGGGTTGGGGATTTGCTAATGGTGGAGGCTCAGATTTCCCTGTCAATGGATTCTTCTCTTATGGTTCAGACGTGACTTTACAACGAGATATTGAATTCCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAATCCTTATTGAAAAGAAACGTTGCAGTGTTTGCCGCTGGATTAAGGGCAAACTCCAAACAATTGCAGACACAAGCAAAAGCATGTCCCGGCAATAAAACTTTGTCAATTTTGGATTCTCCTGCTATACCAGGGACTGATGTCCCGATTGAGCAGTCTGGAGATTCTCAGAATCTGAATAACCAAGATGCTGTGAATTCAGTTCTGAGTAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGTCTGTGGCAGAAGATCAGAAGGATGAGGTGATAGTCACTCTATTTCATCAGATTAAAGATCTTGAGAAACAGGTAAAGGAGCGTAAAGACTGGGCCCATCTGAAAGCAATGCAAGCTGCAAGAAAGCTAAGCAATGATCTGACTGAGCTGAAAATGTTAAGGATGGAAAGAGAGGAAACTCAAAGATTGAAGAGAGGGAAACAAGTGCTTGAGGACACCACTATGAAGAGACTCTCAGAGATGGAGAATGCATTGAGAAAGGCTAGTGGTCAAGTAGACCGTGCCAATGCAGCGGTGAGAAGACTTGAGACAGAAAATGCTGAAATCAAAGCAGAAATGGAAGCTTCTAAATTGAGTGCATCTGAGTCAGTCTCAACTTGCTTGCAAGTTGCAAAAAGGGAGAAAAAGTGCTTGAAGAGGCTTCTAGCTTGGGAAAAGCAGAAAGCTAAGCTACAGCAGGAGATTTCAGATGAAAAAGATAAGATATTGGAGATACAACAAGTATTGGTTCGGATTAAACAATGTCAGAAAGAAGCTGAGATCAAGTGGAGGGAGGAGTTGAAGGCTACAGAGGAAGCCTTGACACTAGTTGAGGAGGAAAGGCGCTCTAAGGAAGGAGCCGAGGCTAATAATAAGAGGAAGCTTGAGGCTTTGCGCCTGAAGATGGAGATAGATTTCCAGCGCCACAAGGATGATCTCCTAAGACTTGAGCAGGAACTTTCACGCCTTAAATTATCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAATACACCACCTACTAGTGAGGCTGAGGGTGCAAAGCCCCAGAGAGAGACAATTGCTAAGATGCTTCAAGAATTAGATAAACTGGAGGATTTTTCGGAGAAAGAAGTCAACCGTGATAGGGAATGCATTATATGTATGAAAGATGAAGTGTCTATTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGAGAACTGGCAAAGCTGCTTGTCCTTGCTGCCAGGTTCCAATCGAACAGAGGATCCGTGTATTTGGAGCAAGTTCTTAG 2172 0.4332 MGCTVREKHIRANRRPRSVKPDTDFCCLDRFSISKSILESGLMPLKYHLGPNDSAQNPNPNSNPNLNPTPNMEESGWGYCTEEQLEEILLKNLEFLYNEAVSKLVALGYDNDVALKAVLRNGHCYGGMDVLTNILHNSLAYLNSNCGGGSSSSNDNLDESEPVFFDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVLPVPSDGCPASTTVDTVCNSGGVMAAPCRFHGGWGFANGGGSDFPVNGFFSYGSDVTLQRDIEFPKRFNLSPSMKSLLKRNVAVFAAGLRANSKQLQTQAKACPGNKTLSILDSPAIPGTDVPIEQSGDSQNLNNQDAVNSVLSKFRDLNLDENLESVAEDQKDEVIVTLFHQIKDLEKQVKERKDWAHLKAMQAARKLSNDLTELKMLRMEREETQRLKRGKQVLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVSTCLQVAKREKKCLKRLLAWEKQKAKLQQEISDEKDKILEIQQVLVRIKQCQKEAEIKWREELKATEEALTLVEEERRSKEGAEANNKRKLEALRLKMEIDFQRHKDDLLRLEQELSRLKLSAQSAELHHQSNTPPTSEAEGAKPQRETIAKMLQELDKLEDFSEKEVNRDRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRTGKAACPCCQVPIEQRIRVFGASS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1772 723 Pfam Zinc finger, C3HC4 type (RING finger) 666 714 - -
Glsi05g1772 723 Coils Coil 568 588 - -
Glsi05g1772 723 Coils Coil 449 490 - -
Glsi05g1772 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 720 IPR013083 -
Glsi05g1772 723 MobiDBLite consensus disorder prediction 619 640 - -
Glsi05g1772 723 MobiDBLite consensus disorder prediction 619 635 - -
Glsi05g1772 723 Pfam Family of unknown function (DUF6592) 92 209 IPR046527 -
Glsi05g1772 723 SUPERFAMILY RING/U-box 668 715 - -
Glsi05g1772 723 SMART ring_2 669 708 IPR001841 -
Glsi05g1772 723 CDD RING-HC_MIP1-like 664 718 - -
Glsi05g1772 723 MobiDBLite consensus disorder prediction 52 74 - -
Glsi05g1772 723 Coils Coil 512 539 - -
Glsi05g1772 723 MobiDBLite consensus disorder prediction 49 74 - -
Glsi05g1772 723 Coils Coil 590 624 - -
Glsi05g1772 723 ProSiteProfiles Zinc finger RING-type profile. 669 709 IPR001841 -
Glsi05g1772 723 PANTHER OS05G0141500 PROTEIN 1 718 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1772 Glsi-ChrGlsi05 65484813 65488119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1772 649 719 C3H Transcription Factor Family AT1G73950 36.000 5.51e-08 53.9