Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1771 ATGCAGGACCGCAAGCTGAGTCTGAGAAGGTCACTCAGCTTCTATTTTCACATCCACAGCACCCAGCCTTCAAGTAGTGTAACTGACGGCTCTGATTGCCCTGTTCAGGCAACGTGGCTCATCATGAACCGTCTAACTCCCATAAGAAAAAAGAGTGTGGCTACAGTTTGCATCACTCACGTGCAAGCACTGAATTGTAAAAATGGGAGAAAGAGTTTTATTCTCGGTGTAGAGTTTGGAAGAGAAAGACAATCTTTTGGAGACTTTATAATGCCAGTTCCACTTGCCCCCTATCCGACACCGCCAGCTTCATATACGCCACCGGGAAATGGTGCACAGAGCCAGCTTGTGTGTTCTGGGTGTAGAAACCTTCTACTATATCCTGTCGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGTAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTCATGTACATCCGTGGAGCCACAAGCGTGCAATGCTCTTGTTGTCACACGGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCCCATGTCAACTGCGGGAACTGTAGGATGCTACTGATGTACCAATATGGAGCAAGATCCGTCAAATGCTCAGTTTGCAATTTTGTAACATCAGTTGGGGTCAGCACAATCTAGCCTCAGCAGCAAGCACGACTGAGCCGGAGTTCAGTGCCTAAATCTATGTGCCTATCAGAAGGCAGAGAAAATTCTGATAGTCACATGTATAGAACGAACCTTGCTATTGAAGAATCGGATAAACATTGCCGCCTTTATCAAAATCTGGATAGCAATGACTTTTTTCCATTTTGGGTTGGGTTGATCACACTTGGCACACTAGCCGTACACCTTCAAAAAAGTAATAATCTACATTTACAGGAATTATCAGTGTGGAAAGAAAAGAAGGTGAAGAAGGAGGAAAATTCATTGTTAATAATGTTTGATGTGTGCAGTAAACTCGTCTCAGCCAGGAAGGTTAACTGGGCCATATCTTTTGTGGAAAAACATAAGCAACCTTTATGGTAG 1071 0.4519 MQDRKLSLRRSLSFYFHIHSTQPSSSVTDGSDCPVQATWLIMNRLTPIRKKSVATVCITHVQALNCKNGRKSFILGVEFGRERQSFGDFIMPVPLAPYPTPPASYTPPGNGAQSQLVCSGCRNLLLYPVGATSVCCAVCNVVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCSVCNFVTSVGVSTIXPQQQARLSRSSVPKSMCLSEGRENSDSHMYRTNLAIEESDKHCRLYQNLDSNDFFPFWVGLITLGTLAVHLQKSNNLHLQELSVWKEKKVKKEENSLLIMFDVCSKLVSARKVNWAISFVEKHKQPLW 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1771 356 NCBIfam zinc finger domain, LSD1 subclass 154 183 IPR005735 -
Glsi05g1771 356 NCBIfam zinc finger domain, LSD1 subclass 115 145 IPR005735 -
Glsi05g1771 356 NCBIfam zinc finger domain, LSD1 subclass 192 222 IPR005735 -
Glsi05g1771 356 PANTHER PROTEIN LSD1 84 145 IPR040319 -
Glsi05g1771 356 Pfam LSD1 zinc finger 195 219 IPR005735 -
Glsi05g1771 356 Pfam LSD1 zinc finger 157 181 IPR005735 -
Glsi05g1771 356 Pfam LSD1 zinc finger 118 142 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1771 Glsi-ChrGlsi05 65472468 65475471 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Glsi05g1771 zf-LSD1 1.4e-09 No_clan