Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1765 ATGGATTCTCGGGAACCGCCTCAGCCCCCGCCACCGCCACAATCACAGCTGCAGTTACAATCACAACCCCCATCAGCGCCACCAAACATGTTGATAGGACATGCTTCGTATCCTTCCACTATGCCCAACCCCAACACGTCTTCCATGATCCCCAATTCCACGGCCACGATGATGGCCCCTGCCACCGCCCGATTTCCGTTTAACTCCCTCGCCCCACAACCTCCTGCCCCTCCATCTAAGCCTTCCGAACCTCTCAATAACACCAGTCCTTACGACGGCTCCTCCTCTGCTTTGAGGCCATGTGGCTTTAGCATTGATTCTACGAAAAAGAAGAGAGGCCGGCCGAGGAAGTATTCCCCGGATGGTAACATTGCTTTGGGTTTGGCTCCCGCGCCTATGTCTTCTTCTGCCGGTCCTGGTGATTTGAGTGGCACTACGTCCGGTGAACCTTCAGCGAAAAAGAATAGGGGAAGGCCGCCGGGCTCTGGAAAGAAGCAGTTGGATGCTCTTGGAGCTGGCGGGATGGGTTTTACTCCACACGTAGTCTTGGTACAAGTTGGCGAGGATATTGCATCAAAGATTATGGCCTTTTCTCAGCAAGGGCCACGGACAATTTGTATTCTTTCTGCTTATGGTGCAGTCTGCAATGTCACCCTTCGACAGCCAGCCTCGTCTGTTAACATTGTGACATTTGAGGGCAAATTTGAGATTATATCTCTATCAGGTTCTTTCCTGATATCTGATAATGATGGTTGTAGCAGAATGAGTGGTCTGAGTGTGTCTCTTGCGGGATCTGATGGACGTGTTATAGGTGGTGGAGTTGCTGGAAAGCTAACTGCAGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTACGGATGGGAAAAGGTCGAGCTCTGGGCCTTCCTCTGCACCAGCACCCCAAATGTTAAATTTTGGTGCACCTATGACTCCAACCAGTCCTACCTCCCAAGGGCCTTCAACTGAATCCTCTGATGACAATGGTGATAGTCCTTTTCATAGGGGGCCTGGACTCTACAGTAGTAATAGTCAGCCCATTCATAATATGCAGATGTATCATCATCAACTATGGGCTGGCCAAACTCAGCAGTGA 1116 0.5072 MDSREPPQPPPPPQSQLQLQSQPPSAPPNMLIGHASYPSTMPNPNTSSMIPNSTATMMAPATARFPFNSLAPQPPAPPSKPSEPLNNTSPYDGSSSALRPCGFSIDSTKKKRGRPRKYSPDGNIALGLAPAPMSSSAGPGDLSGTTSGEPSAKKNRGRPPGSGKKQLDALGAGGMGFTPHVVLVQVGEDIASKIMAFSQQGPRTICILSAYGAVCNVTLRQPASSVNIVTFEGKFEIISLSGSFLISDNDGCSRMSGLSVSLAGSDGRVIGGGVAGKLTAASPVQVIVGSFITDGKRSSSGPSSAPAPQMLNFGAPMTPTSPTSQGPSTESSDDNGDSPFHRGPGLYSSNSQPIHNMQMYHHQLWAGQTQQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1765 371 MobiDBLite consensus disorder prediction 36 59 - -
Glsi05g1765 371 MobiDBLite consensus disorder prediction 138 152 - -
Glsi05g1765 371 MobiDBLite consensus disorder prediction 1 170 - -
Glsi05g1765 371 MobiDBLite consensus disorder prediction 314 334 - -
Glsi05g1765 371 ProSiteProfiles PPC domain profile profile. 173 312 IPR005175 -
Glsi05g1765 371 MobiDBLite consensus disorder prediction 295 352 - -
Glsi05g1765 371 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 293 - -
Glsi05g1765 371 Gene3D - 179 302 - -
Glsi05g1765 371 MobiDBLite consensus disorder prediction 70 84 - -
Glsi05g1765 371 CDD DUF296 178 291 IPR005175 -
Glsi05g1765 371 Pfam Plants and Prokaryotes Conserved (PCC) domain 179 291 IPR005175 -
Glsi05g1765 371 SMART AT_hook_2 153 165 IPR017956 GO:0003677
Glsi05g1765 371 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Glsi05g1765 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 345 IPR039605 GO:0003680
Glsi05g1765 371 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1765 Glsi-ChrGlsi05 65446912 65451212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1765 27 371 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.826 6.66e-73 231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1765 05 65446912 65451212 Glsi09g0296 09 2115545 2120763 CCT