Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1762 ATGTGGAACCCTAGGGAACACCCAGAAGACGATGACTCATGGGAGGTTAGAGCTTTTGCAGAAGACACCAGAAACGTCATGGGCACCACATGGCCTCCCAGGTCCTACACCTGCACCTTCTGTAGAAGGGAGTTCCGTTCAGCCCAAGCTCTGGGCGGCCACATGAACGTCCACCGCCGTGACCGAGCCCGCCTCCACCAATTACACCCAGGTTCAGTCAACCCCAACTCTTCTCACACTCCATACATATTCCCAGCTCAGGAGCTCGCTCCAAATGGCGGATTATGCCTTCTCTACCATTTACCAAGCCCTAATACCACCTTCACTACTTCTCCCACTGCATGTGGGGAATCGCCCTCCACACTCCTCTCCATCTCCCCCTACCCACCTAACAACTTCGATTTTCCAATGGTACGCTCAGGGATTAATTCCTCTAGCAAACTGGAAATGCCCACCACCTCCTCCCATAATGCCCACGAAGAGATTGATCTAGAGCTCCGCCTGGGCCACAGACCAACACCAACCTGA 528 0.5398 MWNPREHPEDDDSWEVRAFAEDTRNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQLHPGSVNPNSSHTPYIFPAQELAPNGGLCLLYHLPSPNTTFTTSPTACGESPSTLLSISPYPPNNFDFPMVRSGINSSSKLEMPTTSSHNAHEEIDLELRLGHRPTPT 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1762 175 MobiDBLite consensus disorder prediction 154 168 - -
Glsi05g1762 175 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Glsi05g1762 175 Gene3D Classic Zinc Finger 25 77 - -
Glsi05g1762 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Glsi05g1762 175 MobiDBLite consensus disorder prediction 145 175 - -
Glsi05g1762 175 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Glsi05g1762 175 Pfam C2H2-type zinc finger 36 60 - -
Glsi05g1762 175 SMART c2h2final6 36 58 IPR013087 -
Glsi05g1762 175 PANTHER OS07G0101800 PROTEIN 9 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1762 Glsi-ChrGlsi05 65414391 65414918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1762 1 172 C2H2 Transcription Factor Family AT4G17810 45.055 1.98e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g1762 zf-C2H2_6 3.2e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1762 05 65414391 65414918 Glsi05g1762 05 65414391 65414918 ECH