Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1755 ATGGATTCTTTCGGATACCTGCTGGATGGACTTGACTTCCAGTCTTTCTCCGGATCCGGGGAGAGCTATTCCTCTTATAACGAGTGTCTTAACTCCAAAAGAACGCAAAACCCTGCAGTGGAAAGTCCCGAAGTGGCTGCCCCGGCAAGACCCGCCAAGCAACTGAAGACCAACACCTGGAGCTCTTGCCACACTGACTTCGTTATGCCTCCCAAGCCTTGTGCTTCTTCCTCTTCCCAAATCATATCTTTCGACACCTCAAATTCATCATCAGTCGCTTCGCAGCAGTTTCACAGTTTGGATTCTAGTGTGAAGCCTAAAACCGAGAATGTCTGTAATGAAAACTTGAATTTCACAGCTTTCATTTCTCAAGGCACCTATGAGGACAAAGCAACCAATAAAGCCGTCACAATGACCAGAAATCCAATCCAAGCACAAGATCACGTAATGGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAGAGGTTCATAGCTCTTTCCGCCATTCTTCCTGGCCTAACAAAGATGGACAAGGCTTCTGTACTGGGAGATGCTATCAAGTATGTGAAACAACTCCAGGAACGCGTGAAGACTCTGGAGGAACAGGTAGCCAAGAAAACTGTGGAATCAGCAGTCTTTGTGAATAGGTCTATTCTGTTCGCCGACGATGATAGCTCCTCATCCGATGAAAATTCTAACAGCCGTTCTAACCAGCCACTCCCGGAAATTGAAGCAAGAGTTTCCGGTAACCAAGTACTCATCAGAATCCACTGTGAGAACCACAATGGCTGTGCTGCCACAATACTCAGCCAGTTAGAAAAACTTCATCTCACTGTTCAGAGTAGCACCTTCTTGCCCTTTGGGAATACCACTCTTGATATATCTATTGTTGCTCAGAGAACCAGAATGGGACTAACAGAGAAGAAGGTCAACCCAAACATGGACGGCAGCGGAATTCTCGGCGAGCGTTAA 972 0.466 MDSFGYLLDGLDFQSFSGSGESYSSYNECLNSKRTQNPAVESPEVAAPARPAKQLKTNTWSSCHTDFVMPPKPCASSSSQIISFDTSNSSSVASQQFHSLDSSVKPKTENVCNENLNFTAFISQGTYEDKATNKAVTMTRNPIQAQDHVMAERKRREKLSQRFIALSAILPGLTKMDKASVLGDAIKYVKQLQERVKTLEEQVAKKTVESAVFVNRSILFADDDSSSSDENSNSRSNQPLPEIEARVSGNQVLIRIHCENHNGCAATILSQLEKLHLTVQSSTFLPFGNTTLDISIVAQRTRMGLTEKKVNPNMDGSGILGER 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1755 323 CDD bHLH_AtNAI1_like 145 217 - -
Glsi05g1755 323 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Glsi05g1755 323 SMART finulus 149 198 IPR011598 GO:0046983
Glsi05g1755 323 Coils Coil 182 209 - -
Glsi05g1755 323 Gene3D - 133 207 IPR036638 GO:0046983
Glsi05g1755 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 208 IPR036638 GO:0046983
Glsi05g1755 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Glsi05g1755 323 PANTHER BHLH TRANSCRIPTION FACTOR 14 299 - -
Glsi05g1755 323 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1755 Glsi-ChrGlsi05 65352350 65355891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1755 50 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.402 6.26e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g1755 HLH 6.9e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1755 05 65352350 65355891 Glsi09g0306 09 2180669 2182000 CCT