Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1739 ATGGGGAGGGCTCCTTGCTGTGATAAATACAACGTGAAGAAAGGTCCATGGTCGCCTGAGGAAGACGCCAAACTCAAGGCTTATATTGAGCAGCACGGTACCGGCGGCAACTGGATAGCTCTGCCCCAGAAGATAGGCCTTAAGAGATGTGGGAAAAGCTGCCGTCTTCGCTGGTTGAATTATCTTCGCCCTAACATTAAGCATGGGGGTTTCTCGGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGATGGTCTATTATAGCAGCACAATTACCAGGACGAACAGATAACGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTCTTGGGCAAGCAGCGGAAGGAACAACAGGCCCAAGCTCGCTTAAAGCAAGAGATGAAGAGAGAGAATGAAAATTTGGTGGTAGGCGGAGGGGTTATGAACCAAACTCCCATTTGGCCTGCTGAGCTTTCTGTGCCCATGCCACTCCCAAATGCTTCCGTCCAACACTCTGATCTCAACAATCAATATTTACCATCCCTCAGGAACTTGATAACCAAACTAGGGGGAAGATTTTCTGACCAACATCAACAACCATACTCCAGCAACGCAGTCACCGACACCATAAATTCGCAGCACCCATATGACATTTCCATCCCATATCCAACCTCAATGAATATGATAAACCCTGCACACAACACTAGCAGTTCTCAGTCACCAAACATATTTGAAGGGTTTGAAAACTTCCCCAATGATTTGAGTGATTTGATGTGCGTGAACCCGCAAGAAATAGCTATAGATGCATTGCAGGGTTTCTATGGCAGCACTGGCACGGCTTCAACAGAAAGCACTAGCTGGGGAGATATGAGCTCTCTGGTTTACTCGCCTTTGGTTTCTGAAGGAATTCCTCAAGATGTTGTTTTCAAGGAGTCTAGGTACTTTGGGATGCAATAA 960 0.4583 MGRAPCCDKYNVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARLKQEMKRENENLVVGGGVMNQTPIWPAELSVPMPLPNASVQHSDLNNQYLPSLRNLITKLGGRFSDQHQQPYSSNAVTDTINSQHPYDISIPYPTSMNMINPAHNTSSSQSPNIFEGFENFPNDLSDLMCVNPQEIAIDALQGFYGSTGTASTESTSWGDMSSLVYSPLVSEGIPQDVVFKESRYFGMQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1739 319 Coils Coil 121 141 - -
Glsi05g1739 319 CDD SANT 71 113 IPR001005 -
Glsi05g1739 319 SMART sant 13 64 IPR001005 -
Glsi05g1739 319 SMART sant 67 115 IPR001005 -
Glsi05g1739 319 FunFam Transcription factor RAX3 70 141 - -
Glsi05g1739 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi05g1739 319 PANTHER OS09G0431300 PROTEIN 1 216 - -
Glsi05g1739 319 FunFam Transcription factor RAX3 7 68 - -
Glsi05g1739 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi05g1739 319 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi05g1739 319 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi05g1739 319 CDD SANT 16 62 IPR001005 -
Glsi05g1739 319 Gene3D - 69 143 - -
Glsi05g1739 319 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi05g1739 319 Gene3D - 7 68 - -
Glsi05g1739 319 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi05g1739 319 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1739 Glsi-ChrGlsi05 65241901 65243061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1739 1 135 MYB Transcription Factor Family AT5G65790 91.111 2.31e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi05g1739 Myb_DNA-binding 3.7e-14 CL0123