Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1733 ATGGCTGAAACAATTGAAAATACAATGAAAGAAACTGTAAGCGAGTACGAAGAAGTGGAGGACCAAACTTTCGAAGAGCTTGGATTAGACGCCCGTCTCACTCGTGCCCTACTCAAGAAGGGAATTGAGAAACCCACTCCAATTCAGCGGGTTGCAATTCCACTCATATTTGAAGGTAAGGACGTGGTTGCTCGAGCAAAGACGGGTTCTGGTAAGACATTTGCTTACCTTCTTCCGTTGCTTCAAAAATTGTTCACTAATAATGTTCAAAGGAAGAAGCTAGCACCCAATGCGTTCATTCTTGTGCCAACTCGAGAACTGTGTCAACAGGTATATGCAGAGCTCTCATCTCTCATTGAATTATGCAGAGTTCAATTGAAAGCCGTGCAATTGACTAGCAATATGCGAGCTTCTGATCTGCGGACAACACTGGCTGGACCCCCGGATGTTTTGGTCTCTACACCTGCTTGCATAGCAAAATGCTTGTCCACTGGCATACTTCAAGTAGCATCGATTAATGTTTCACTTGAAACTTTGGTTCTTGATGAGGCAGATCTTCTATTATCATACGGCTATGAAAATGATATAAAGTCTTTTACAGCTCATATACCCAGATGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTTTACACAACCCCTTTATTTTGACTTTGCCTGAAGTAGGAAATCAAAAGGACGAAGTCATCCCTAAAAATGTTCAACAGTTTTGGATCTCATGCTCTGCCAGTGATAAGTTGCTTTACATCCTTGCCCTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACCAATAACATAGACATGAGTTTCAGATTAAAGCTATTTCTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGAGTTCAATGCTGGTCTCTTTGATTATCTGATTGCAACCGATGACAGCCACACAAAGGAGAATGATGAACCAATTAAGGAAAGTAATGGGAAGTTGCAGAGGTCCAGGAAACATGTCAAGCAAAAATTAGATTCTGAATTTGGAGTAGTGAGGGGAATTGATTTTAAAAATGTATATACGGTTATAAGCTTTGAAATGCCTCAAAGTATTACAGGATATGTTCATCGAATAGGACGTACTGGAAGAGCATACAGTTCTGGTGCTTCTATTTCTCTGGTTTCTCCAGATGAGATGGAAACCTTAAATGAAATAAGATCTTTTGTTGGGGATGATGTAAACAATGGCTCAAACTCAATTGCTGAATTTCCATTGCTCACCAAGAATTCAGTGGAATCTTTGCGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACAAAAATTGCTGTCCGTGAATCACGAGCCCAGGATTTGAGGAATGAAATTCTGAATTCTGAAAAGTTGAAGGCCCACTTTGAAACTAATCCAAGGGAACTAGATCTATTGAAGCATGATAAAGTTCTGAGCAAAAATGCCCCTCCTCAGTACCTACGTGATGTGCCCGACTACCTTGTGGACAAAACAACCAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAGTCGCATCCGGGGATCCAAGAGAAAGTTCAGAAAAGGTGGAGACCCTCTGAAGGCTATATCTGCTGAGGTATCAAAAAGAGCTCGTATGAAGACTGGTGCAAGCCATAACAATGATGGACATAAACGCAAGAGGAAGAAGGAAGTTTGA 1788 0.4111 MAETIENTMKETVSEYEEVEDQTFEELGLDARLTRALLKKGIEKPTPIQRVAIPLIFEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLAPNAFILVPTRELCQQVYAELSSLIELCRVQLKAVQLTSNMRASDLRTTLAGPPDVLVSTPACIAKCLSTGILQVASINVSLETLVLDEADLLLSYGYENDIKSFTAHIPRCCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNQKDEVIPKNVQQFWISCSASDKLLYILALLKLGLVQKKVLIFTNNIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHTKENDEPIKESNGKLQRSRKHVKQKLDSEFGVVRGIDFKNVYTVISFEMPQSITGYVHRIGRTGRAYSSGASISLVSPDEMETLNEIRSFVGDDVNNGSNSIAEFPLLTKNSVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPRELDLLKHDKVLSKNAPPQYLRDVPDYLVDKTTKEAREMVKLARDAMGNNSRIRGSKRKFRKGGDPLKAISAEVSKRARMKTGASHNNDGHKRKRKKEV 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1733 595 Coils Coil 475 495 - -
Glsi05g1733 595 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Glsi05g1733 595 MobiDBLite consensus disorder prediction 544 595 - -
Glsi05g1733 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Glsi05g1733 595 SMART ultradead3 41 254 IPR014001 -
Glsi05g1733 595 MobiDBLite consensus disorder prediction 556 583 - -
Glsi05g1733 595 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Glsi05g1733 595 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Glsi05g1733 595 Gene3D - 238 443 IPR027417 -
Glsi05g1733 595 CDD DEADc_DDX56 29 236 - -
Glsi05g1733 595 Gene3D - 1 236 IPR027417 -
Glsi05g1733 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Glsi05g1733 595 CDD SF2_C_DEAD 251 414 - -
Glsi05g1733 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 235 IPR027417 -
Glsi05g1733 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Glsi05g1733 595 Coils Coil 2 22 - -
Glsi05g1733 595 PANTHER RNA HELICASE 10 527 - -
Glsi05g1733 595 SMART helicmild6 291 405 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1733 Glsi-ChrGlsi05 65194460 65200522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1733 23 443 Eukaryotic Initiation Factors Gene Family AT3G19760 24.703 5.31e-35 135