LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g1730	ATGTTGTCCGCCCTCCCACCTTCCGACTCTTTGTTCGGAAACCCATTCTCTGCCTTCGACGGCGGTTTCACGCCGTGGGAGCTCCCGGACTTTTCCTCGTTGCTCAAACCAACCGAGCCCATCGCCACTAATTCCAGTTCCTCCGGTTCAGACGAGCATGCGAAAACAAAAGCCCTCTCTGAGGAACCGGACCGTGCAGCATCCATTATGGAGGAGCGAAAGCTGAGACGAATGAGATCGAACCGGGAATCAGCGAGGCGGTCACGGATGCGCAAACAGAAGCATATAGAGAACTTACGGAACCAGGTCAACAGGTTCGGAACGGAGAACCGAGAACTAAACAACCGGTTGCAGTTCCTGCTGCATCACTCTAACCGCGTACGAACCGAAAACGAGTGGCTCCGGTCCGAGAGAACCATGCTCCGGCAAAAATTGTCGAGCATAAGTCAAATTTTGGTTTTCCAACAATTGCAACCCTTCTCGTCTGCATGGCCATGCAGTACTGCTGTCACCAACAGAATAAACATATGA	531	0.5235	MLSALPPSDSLFGNPFSAFDGGFTPWELPDFSSLLKPTEPIATNSSSSGSDEHAKTKALSEEPDRAASIMEERKLRRMRSNRESARRSRMRKQKHIENLRNQVNRFGTENRELNNRLQFLLHHSNRVRTENEWLRSERTMLRQKLSSISQILVFQQLQPFSSAWPCSTAVTNRINI	176

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g1730	176	MobiDBLite	consensus disorder prediction	37	68	-	-
	Glsi05g1730	176	CDD	bZIP_plant_GBF1	74	125	IPR045314	GO:0003700\|GO:0006355
	Glsi05g1730	176	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	71	134	IPR004827	GO:0003700\|GO:0006355
	Glsi05g1730	176	FunFam	BZIP transcription factor	71	122	-	-
	Glsi05g1730	176	MobiDBLite	consensus disorder prediction	37	53	-	-
	Glsi05g1730	176	Gene3D	-	71	125	-	-
	Glsi05g1730	176	SMART	brlzneu	69	133	IPR004827	GO:0003700\|GO:0006355
	Glsi05g1730	176	MobiDBLite	consensus disorder prediction	54	68	-	-
	Glsi05g1730	176	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	76	91	IPR004827	GO:0003700\|GO:0006355
	Glsi05g1730	176	Coils	Coil	82	116	-	-
	Glsi05g1730	176	PANTHER	BZIP TRANSCRIPTION FACTOR 44	41	155	-	-
	Glsi05g1730	176	Pfam	bZIP transcription factor	73	131	IPR004827	GO:0003700\|GO:0006355
	Glsi05g1730	176	SUPERFAMILY	Leucine zipper domain	73	123	IPR046347	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g1730	Glsi-ChrGlsi05	65164612	65165142	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g1730	1	158	bZIP Transcription Factor Family	AT2G22850	34.579	1.55e-28	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi05g1730		bZIP_1	5.3e-10	CL0018