Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1724 ATGCCGATGTATCCGTCTTCTAAGTGGGGTGTGGTTGTTGGGTTCGAGGGTAGTGGTGACGGGCAGATTCTAGATCTGGATACCGCCGTTAAAGATGGGGTTTTAGGTGGTATTGACGTTGGGATTGTGGGAGCCGGGGTTGGTGAGAAGTTGGATCTGAGGAAGATGATTCAAGAGCTCGACTTATCCGAAGTTCCTTCAGTGTTTATCTGCCCGATCTCCCTTGAACCAATGCAAGACCCAGTGACACTCTGCACGGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGGCACGTCACCTGCCCTACTACGATGCAAGAGCTCTGGGACGATTCCATTACTCCAAATACGACCCTGTACCGTCTAATATACACTTGGTTTTCTCAGAAGTACCTGCTGATGAAGAAGAGATCCGAGGACGTGCATGGGAGGGCGTTAGAACTTCTGGGGACTCTGAAGAAGGTGAAGGGTCAAGCTCGAGTTCAAGCCCTCAAGGAGCTCCATCAAGTGGTGACTGCTCATATCACTGCCCGCAAGACAGTCGTTGATGAAGGTGCAGTCTCTGTAATGTCTTCCTTACTCGGTCCTTTCACTTCCCATGCTGTTGGCTCCGAGGTCATTGGTATTCTTGTAAGTTTAACCCTTGATTCTGAATCAAAAAAGAATTTAATGCAACCTGCAAAGCTTTCTTTAATGGTGGACATTTTGAACGAGGGGTCAATTGAGACCAAAATCAATTGCACCCGTCTGATTGAATCATTACTTGAGGGGAATGATTTTCGGTCGGAGATTATATTAAGCCATAGCCTATTAATTGGGTTGATGAGGCTGGTGAAGGATAAGAGGCACTCAAATGGAATTCTTCTTGGACTTTGCCTCCTCAGAACAGTATGCTTGCATAAAGAGGTTAGGAATTTACTAGTGAGCATTGGGGCTGTTTCTCAATTGATTGAATTGTTGCCTGGTTTGGAGCCCGAGTGTTCCGAGTTAGCGCTTTCCGTTTTAGATGCATTGGCATCTATACCCGAAGGCAGAGTAGCTTTGAAGGACTGTTCTAACACTATACCCAGTATGGTGAATCATTTAATGAGGATCTCAGAGAACTGCACCCAATATGCATTGTCAATCCTATGGTCTGTGTGCAAGCTTGCGCTTGAGGAGTGCTCATCGGTTGCTCTGGATGCAGGACTTGCTGCAAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATATTGAAACAGCAGTCTGCTGAGCTTCTGAAGCTGTGTAGTTTAAATTTTTCAGATACCATCTTCATTGCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1350 0.4593 MPMYPSSKWGVVVGFEGSGDGQILDLDTAVKDGVLGGIDVGIVGAGVGEKLDLRKMIQELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHVTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVHGRALELLGTLKKVKGQARVQALKELHQVVTAHITARKTVVDEGAVSVMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKLSLMVDILNEGSIETKINCTRLIESLLEGNDFRSEIILSHSLLIGLMRLVKDKRHSNGILLGLCLLRTVCLHKEVRNLLVSIGAVSQLIELLPGLEPECSELALSVLDALASIPEGRVALKDCSNTIPSMVNHLMRISENCTQYALSILWSVCKLALEECSSVALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNFSDTIFIAKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1724 449 Gene3D - 299 446 IPR011989 -
Glsi05g1724 449 PANTHER WDSAM1 PROTEIN 61 434 IPR045185 GO:0061630
Glsi05g1724 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Glsi05g1724 449 Gene3D - 142 298 IPR011989 -
Glsi05g1724 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Glsi05g1724 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Glsi05g1724 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
Glsi05g1724 449 SUPERFAMILY RING/U-box 60 135 - -
Glsi05g1724 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Glsi05g1724 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1724 Glsi-ChrGlsi05 65125191 65126540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1724 1 449 U-box Gene Family AT3G49810 73.274 0.0 656