Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1715 ATGGGTGCTCCAAAGCAAAAATGGACTGCAGAAGAAGAAGCAGCTCTGAAAGCTGGAGTAATCAAACATGGGGCAGGAAAGTGGCGTACTATACTTACAGACCCAGAATTCAGTGCTATTTTGTGCATGCGTTCAAATGTAGATCTGAAGGATAAATGGAGAAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCCAAACTTGCACTTAAAAGGAACCTAACAACCCCAAAAAATGACAACAACCATATGGCCTTGAGTACTGTAGTTCAACGTGATGAAGGTGTTCTTGATACTAAGCCTCTTGCAGTTTCTGGTGGAATTTTGCAGTCTGCTAATTCAAAAGAACAAATACCAAGGTTGGATAATCTTATATTAGAGGCTATTATCAATTTGAAGGAGCCAAAGGGTTCTGACAGGGCTGCCATTGCTGCTTACATAGAGGAGCAATACTGGTCTCCACCAACCCTCAGAAAGCTATTGTCGACAAAACTAAAGCATATGGTGGCAAATGGCAAATTAACTAAGGTTAAACATAAGTACAGGATTACACCAAATTTGACAATCTCTGAAAAAAGAAGATCCTCTTCGTTGTTACTTCTTGAAGGGAGGCCCAAAGATTCTCCAAAAGAGGATAAGACTGATGTCAACATCCTTTCAAAATCGCACATTGATGCAGAGCTATCAAAAATGAAGGGCGTGACAGCCCAAGAGGCTGCTGCAGCCGCTGCAAAAGCAGTGGCAGAGGCAGAAGCTGCCATAGCAGAGGCAGAGGCAGCAGCTAGGGAAGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCGCAAGTGTTTGCAAAAGCAGCAATCAAAGCACTAAAATGCAGAACACTTCAAATTTGATAG 888 0.4313 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILCMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLTTPKNDNNHMALSTVVQRDEGVLDTKPLAVSGGILQSANSKEQIPRLDNLILEAIINLKEPKGSDRAAIAAYIEEQYWSPPTLRKLLSTKLKHMVANGKLTKVKHKYRITPNLTISEKRRSSSLLLLEGRPKDSPKEDKTDVNILSKSHIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAIKALKCRTLQIX 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1715 295 Gene3D - 2 59 - -
Glsi05g1715 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Glsi05g1715 295 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Glsi05g1715 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Glsi05g1715 295 Coils Coil 242 279 - -
Glsi05g1715 295 CDD H15 121 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1715 295 SMART sant 4 59 IPR001005 -
Glsi05g1715 295 CDD SANT_TRF 6 57 - -
Glsi05g1715 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Glsi05g1715 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1715 295 Gene3D - 115 197 IPR036388 -
Glsi05g1715 295 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Glsi05g1715 295 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi05g1715 295 FunFam Telomere repeat-binding factor 1 8 85 - -
Glsi05g1715 295 FunFam Telomere repeat-binding factor 1 2 58 - -
Glsi05g1715 295 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Glsi05g1715 295 Pfam linker histone H1 and H5 family 121 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1715 Glsi-ChrGlsi05 65062144 65071282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1715 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 58.362 3.10e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi05g1715 Linker_histone 2.8e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1715 05 65062144 65071282 Glsi09g0359 09 2509439 2513009 CCT