Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1711 ATGGGGAAGAAGCAGCACAGTAAAGATCGTATGTTCATCACCAAAACAGAGTGGGCTACGGAATGGGGAGGAGCCAAATCCAAAGACAATCGTACCCCATTCAAACGTCTTCCATTCTATTGCTGCGCGCTTACATTTACGCCGTTTGAGTATCCGGTGTGCACAGCTGATGGGAGCGTTTTCGATGTTATGAATATAACCCCATATATTATCAAATATGGAAAGCATCCTGTCACTGGAGCTCCGCTGAAGCAGGAGGATCTCATTCCACTTACGTTCCACAAAAATTCAGATGGGGAATATCATTGCCCTGTGCTAAGCAAGGTTTTCACTGAATTTACACATATTGTGGCTGTGAAGACCACAGGAAATGTTTTCTGCTATGAGGCCATTAAAGAATTAAACATCAAGACAAAAAACTGGAAGGAGCTTCTCACCGATGAGCCATTCACTAAGGATGACCTCATAACAATTCAGAATCCGAATGCACTCGACAGCAAGGTTCTTCTGGATTTTGATCACGTTAAAAATGGTTTTAAAATTGATGATGAAGAAATAAAGAGAATGAATTCAGATTCAACCTATAACATAAATGTGTCTGGAGATATCAAACAAATGCTTCAGGAGCTTGGAACTGAAAGAGGAAAGGAAACTGCTATGCATGGGGGAGGCGGTGGCAAGGCTCAAAAAGAAAGGGCTGCTGCACTTGCTGCAATCTTAGCTGCAAGGTCGCGTGTGAAGGAGGATTCCAAATCAAGTGAAGATGTCAAAGCTCCTCAGGGATTTAGTATAGTAGATGCTGCTTCTGCTTCAGTACATGGAAGAAGCGCAACTGCTGCCAAAGCCTCATCAAGTGATAAAACTGCTGCTAGGATAGCTATGCACTTGGCTGGTGACAGGGTGCCAGTGAATGGGAAGCTTGTAAAAAGTCGTTTCACTACTGGTGCTGCTTCACGATCCTTCACTTCAACATCTTTTGACCCAGTTACAAAAAATGAATATGAATATCTGAAAGTTGAGAAGAATCCAAAGAAGAAAGGATATGTACAGTTACATACAACTCATGGTGATTTGAACATTGAGCTGCACTGTGATATAACACCCAGGACATGCGAGAACTTTATCACACTTTGTGAACGTGGATATTATAATGGAGTTGCATTTCATAGAAACATTCGGAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGGAAAGGAGGCGAATCAATATGGGGAAAAACTTTTAAAGATGAAGTTAACTCCAAATTACTTCATTCTGGAAGGGGTGTTGTTAGCATGGCTAACAGTGGTCCACACACCAATGGCTCCCAGTTTTTCATCCTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTTGGTGGATTGACAACATTGTCAGCCATGGAAAAGGTTCCTGTTGATGACAATGACCGACCTCTAGAGGAAATTAAGATAACAAGTATCACAGTTTTTGTCAATCCCTACACGGAACCAGATGAGGAAGAAGAACAGGAGAATGCCAAAGAGAAGAATGTGGAGGATGGAGATAATGATAAGGTTGGCTCATGGTATAGCAATCCAGGCGCTGGAACAACTGAATCTGGAGGCATTGGGGGTGGTGGTGTTGGCAAGTACTTGAAAGCTAGGAATGCTCAAGAATCTGCTACTGCTGACACTAATACATCAGTTGTAGGAAAGAAAAGAAAAGTAGTTGTTAGTGGTGAATTTAAAGATTTCTCAGCATGGTAA 1776 0.4172 MGKKQHSKDRMFITKTEWATEWGGAKSKDNRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYIIKYGKHPVTGAPLKQEDLIPLTFHKNSDGEYHCPVLSKVFTEFTHIVAVKTTGNVFCYEAIKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNGFKIDDEEIKRMNSDSTYNINVSGDIKQMLQELGTERGKETAMHGGGGGKAQKERAAALAAILAARSRVKEDSKSSEDVKAPQGFSIVDAASASVHGRSATAAKASSSDKTAARIAMHLAGDRVPVNGKLVKSRFTTGAASRSFTSTSFDPVTKNEYEYLKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGKGGESIWGKTFKDEVNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLSAMEKVPVDDNDRPLEEIKITSITVFVNPYTEPDEEEEQENAKEKNVEDGDNDKVGSWYSNPGAGTTESGGIGGGGVGKYLKARNAQESATADTNTSVVGKKRKVVVSGEFKDFSAW 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1711 591 CDD cyclophilin_RING 348 505 - -
Glsi05g1711 591 Gene3D - 329 513 IPR029000 -
Glsi05g1711 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Glsi05g1711 591 SUPERFAMILY Cyclophilin-like 348 511 IPR029000 -
Glsi05g1711 591 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 329 513 - -
Glsi05g1711 591 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 383 400 IPR020892 GO:0003755|GO:0006457
Glsi05g1711 591 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Glsi05g1711 591 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 352 499 IPR002130 GO:0000413|GO:0003755
Glsi05g1711 591 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Glsi05g1711 591 SUPERFAMILY RING/U-box 37 104 - -
Glsi05g1711 591 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Glsi05g1711 591 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Glsi05g1711 591 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 348 499 IPR002130 GO:0000413|GO:0003755
Glsi05g1711 591 MobiDBLite consensus disorder prediction 504 547 - -
Glsi05g1711 591 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 342 513 IPR044666 -
Glsi05g1711 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 459 474 IPR002130 GO:0000413|GO:0003755
Glsi05g1711 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 388 400 IPR002130 GO:0000413|GO:0003755
Glsi05g1711 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 362 377 IPR002130 GO:0000413|GO:0003755
Glsi05g1711 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 431 446 IPR002130 GO:0000413|GO:0003755
Glsi05g1711 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 446 458 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1711 Glsi-ChrGlsi05 65042086 65046305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1711 1 591 U-box Gene Family AT5G67530 76.628 0.0 915