Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1707 ATGGAGAATTATTTAAATATGAACTTTGAGGTGAAGTCGAAGAACTCCTCTGAAGAGGTTCTTCAAAGATGGAGAAATTTGTGCGGCATAGTAAAGAACCCCAAAAGACGGTTCCGTTTCACTGCCAATCTCTCCAAGCGGGGCGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGATTGCTGTTTTGGTTTCGAAAGCTGCATTTCAATTTATCCAAGGTGTGCAAGTAATTGATTATGTTGTACCTGAGGAAGTTAAAGCTGCAGGTTTTGAGATCTGTGGCGATGAATTGGGATCTATTGTTGAAGGCCATGATGTAAAGAAGCTGAAATTTCACGGTGGAGCCAGTGGTGTTGCAGATAAGCTTTCTACATCAACCACTAATGGGCTTAGCAGTGATGTTGATTTACTGAACAGAAGACGGCGAATTTATGGAATCAATAAATTTACTGAGAGTGCGGCCCGAAGTTTCTGGGTTTTTGTCTGGGAAGCCCTTCAAGACATGACTCTCATGATTCTTGGGGTGTGTGCTTTTATGTCTCTGATAGTTGGCATTGCAATGGAAGGATGGCCAGTTGGAGCCCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTGGACAAGGAGAAGAAGAAGATTTCCATTCAGGTCATAAGAAATGGTTATAGGCAGAAAATGTCAATATATGAATTACTTCCTGGGGATATTGTGCATCTTGCTATAGGAGACCAAGTCCCTGCAGATGGACTATTTCTTTCAGGATTTTCTGTGTTGATTGACGAGTCAAGTTTAACTGGAGAGAGTGAGCCAGTGATGGTGAGTTCTGAAAATCCATTTCTTCTTTCTGGAACAAAGGTCCAAGACGGATCGTGCAAAATGTTGGTTACAAGTGTTGGGATGAGGACTCAGTGGGGTAAGTTGATGGCAACTCTGAGTGAAGGTGGGGATGATGAAACCCCGTTGCAGGTGAAGCTGAATGGAGTGGCAACCATTATTGGGAAGATTGGTCTGTTTTTTGCCGTAATTACTTTTGCTGTTTTGGCACAAGGACTTTTGAGCCGTAAACTCCAAGAAGGAATATTCTGGACCTGGTCTGGAGATGATGCGTTGGGAATGTTGGAATCCTTTGCTGTTGCAGTTACGATCGTTGTTGTTGCTGTCCCAGAGGGGCTGCCATTAGCCGTGACATTGAGCCTTGCATTTGCTATGAAGAAGATGATGAATGACAAGGCCCTTGTCCGACATTTGGCAGCTTGTGAGACAATGGGATCAGCCACAACCATATGCAGTGATAAGACTGGGACATTAACAACCAACCACATGACTGTTGTCAAAACATGCATTTGTATGAATATCGAGGAAGTGGCCAACAATGCTTCTAGCTTGTGCCCTGATCTCCCAGAGTCAGCTAAGAAACTGCTGCTACAGTCCATATTTAATAATACTGGAGGAGAAGTTGTGGTTAACGAAAAAGGAAAAGCCGAGATTTTGGGGACACCTACCGACACTGCAATATTGGACTTTGGCTTGTCACTGGGTGGGGATTTTCAGGCAGAGAGACAAGCATGTAAACTTGTTAATGTTGAACCTTTCAACTCTTTGAAGAAAAGGATGGGTGTAGTTGTGGAGCTTCCTGAAGGAGGTTTACGAGCCCACTGTAAAGGTGCTTCTGAAATAATGCTGGCTGCCTGTGACAAGGTGATCAACTCAAAAGGTGAGGTTGTTCCGCTTGATGAAGAATCAAGTAATCATCTTAAGGCTACAATCAACCAATTTGCAAATGAGGCACTTAGAACTCTATGCCTTGCCTATATGGAGTTGGAAAAAGGATTCTCAGCTAAAGATCCCATTCCAGTTTCTGGGTATACTTGTATTGGAGTTGTCGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCAGTTGCGGTTTGTCGTTCCGCTGGTATAACAGTAAGGATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCTAGAGAATGTGGAATTTTAACAGATGACGGCATAGCCATTGAAGGTCCAGAATTCAGAGAGAAGACTCCGGAGGAATTGTTCCAGCTGATTCCGAAAATTCAGGTTATGGCTCGATCTTCACCTTTGGACAAGCATACATTGGTGAAGCACCTGCGTACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCAGCACTTCATGAAGCCGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCGGATGTCATCATTCTGGATGATAATTTCTCCACAATCGTGACAGTGGCTAAATGGGGACGTTCAGTTTACATAAACATTCAGAAATTCGTGCAGTTCCAACTGACGGTTAATGTGGTAGCATTACTAGTGAACTTCACTTCAGCATGCGCCACAGGAAGTGCACCCCTCACAGCTGTCCAACTATTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTCGCTCTTGCAACTGAACCTCCGAATGATGAATTGATGAAGCGTTCACCAGTGGGAAGGAAGGGGAATTTCATCACCAATGTCATGTGGAGGAATATCTTGGGACAATCATTGTATCAGATTATGGTGATATGGTTTCTTCAGACTAGAGGAAAAGCGTTCTTTAATCTCGTGGGCCCTAATGCTGATCTGATCTTAAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTCTTCAATGAAATAAGCTCCCGTGAGATGGAGAAAATAGATGTTTTCAAAGGCATATTTGATAATTATGTTTTCGTAGGTGTCCTCAGTTGCACTGTTATCTTTCAAATCATAATAATTGAGTACTTGGGAACCTTCGCAAACACTACACCTCTCACTATGGTGCAGTGGTTCTTTAGCATACTTATAGGATATTTGGGCATGCCAATCGCAGCTTGCGTAAAGAAGATTCCTGTCTGA 3042 0.4323 MENYLNMNFEVKSKNSSEEVLQRWRNLCGIVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRIAVLVSKAAFQFIQGVQVIDYVVPEEVKAAGFEICGDELGSIVEGHDVKKLKFHGGASGVADKLSTSTTNGLSSDVDLLNRRRRIYGINKFTESAARSFWVFVWEALQDMTLMILGVCAFMSLIVGIAMEGWPVGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVIRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFLSGFSVLIDESSLTGESEPVMVSSENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLAQGLLSRKLQEGIFWTWSGDDALGMLESFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNIEEVANNASSLCPDLPESAKKLLLQSIFNNTGGEVVVNEKGKAEILGTPTDTAILDFGLSLGGDFQAERQACKLVNVEPFNSLKKRMGVVVELPEGGLRAHCKGASEIMLAACDKVINSKGEVVPLDEESSNHLKATINQFANEALRTLCLAYMELEKGFSAKDPIPVSGYTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKTPEELFQLIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACATGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRKGNFITNVMWRNILGQSLYQIMVIWFLQTRGKAFFNLVGPNADLILNTLIFNSFVFCQVFNEISSREMEKIDVFKGIFDNYVFVGVLSCTVIFQIIIIEYLGTFANTTPLTMVQWFFSILIGYLGMPIAACVKKIPV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1707 1013 Gene3D - 167 1001 - -
Glsi05g1707 1013 SFLD p-type atpase 434 804 IPR044492 -
Glsi05g1707 1013 PANTHER CATION TRANSPORTING ATPASE 64 1012 - -
Glsi05g1707 1013 FunFam Calcium-transporting ATPase 769 1013 - -
Glsi05g1707 1013 Gene3D - 462 656 IPR023299 GO:0000166
Glsi05g1707 1013 Gene3D - 449 797 IPR023214 -
Glsi05g1707 1013 Gene3D - 141 335 - -
Glsi05g1707 1013 SUPERFAMILY Calcium ATPase, transduction domain A 238 332 IPR008250 -
Glsi05g1707 1013 Pfam Cation transport ATPase (P-type) 512 590 - -
Glsi05g1707 1013 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi05g1707 1013 Pfam Cation transporter/ATPase, N-terminus 117 184 IPR004014 -
Glsi05g1707 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Glsi05g1707 1013 Pfam E1-E2 ATPase 235 430 - -
Glsi05g1707 1013 CDD P-type_ATPase_Ca_PMCA-like 141 885 - -
Glsi05g1707 1013 FunFam Calcium-transporting ATPase 645 797 - -
Glsi05g1707 1013 FunFam Calcium-transporting ATPase 215 335 - -
Glsi05g1707 1013 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 NCBIfam HAD-IC family P-type ATPase 544 697 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 NCBIfam HAD-IC family P-type ATPase 723 835 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 NCBIfam HAD-IC family P-type ATPase 385 474 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 NCBIfam HAD-IC family P-type ATPase 204 374 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1707 1013 Gene3D - 16 76 - -
Glsi05g1707 1013 FunFam Calcium-transporting ATPase 16 76 - -
Glsi05g1707 1013 SUPERFAMILY HAD-like 450 857 IPR036412 -
Glsi05g1707 1013 SMART Cation_ATPase_N_a_2 114 189 IPR004014 -
Glsi05g1707 1013 SFLD C1.7: P-type atpase like 434 804 - -
Glsi05g1707 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1012 IPR023298 -
Glsi05g1707 1013 Pfam Cation transporting ATPase, C-terminus 837 1011 IPR006068 -
Glsi05g1707 1013 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 48 IPR024750 GO:0005516
Glsi05g1707 1013 FunFam Calcium-transporting ATPase 462 656 - -
Glsi05g1707 1013 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Glsi05g1707 1013 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Glsi05g1707 1013 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Glsi05g1707 1013 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Glsi05g1707 1013 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Glsi05g1707 1013 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Glsi05g1707 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 661 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1707 Glsi-ChrGlsi05 65024373 65029155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1707 1 1013 Primary Pumps ATPases AT4G37640 82.643 0.0 1727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1707 05 65024373 65029155 Glsi05g1707 05 65024373 65029155 ECH