Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1695 ATGGCCCAGTTTCTAGCTCCTTTGTTGTCAGAAGTCAGAACGATTGATCTTTTTTTTTTTGGCAACAATTCTTGGTTTTCTTCCTATCTCTGGCGTTATAAACTTGAGCCATCCCACCATTCATGTTCTTCCATTGTTGGCTTCCGTGACTTCGCTGCGTCTGCGGCAACTCCGCTCTCACGCCCTCACCACTATCATCCGCCGGCGCAGCCTCACCACTCCCACCTGCGACCGCTGTCACAACCCGACACCCTGGCGCAGAAGATTGGAAAATCGACTCGCCGCCCCGGCGCTTCCTCTAAGGCCAGGGTTTATGCTGACGTCAACGTTGTCCGTCCCAAGGAATACTGGGACTATGAGTCCCTAACTGTCCAGTGGGGGGAGCAAGATGATTATGAGGTAGTGAGGAAGGTAGGAAGGGGGAAATACAGTGAGGTATTTGAGGGTGTTCACTGCACGGATAATGAAAAGTGTGTCATCAAGATTCTCAAACCAGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAATCTTTGTGGAGGTCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAATCGAAGACTCCAAGCCTTATTTTTGAATATGTTAATAACACTGATTTTAAAGTTCTCTATCCTACACTGTCAGACTATGATATACGATTTTACATCTATGAACTTCTAAAGGCCCTGGATTATTGCCACTCACAAGGAATTATGCATCGGGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGTCTGATAGATTGGGGGTTGGCAGAGTTCTATCATCCTGGAAAAGAATATAATGTTCGAGTAGCCTCAAGATATTTTAAAGGCCCTGAGCTTCTTGTTGATCTTCAAGATTATGATTACTCTTTAGATTTGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTCCGTAAAGAGCCCTTCTTTTATGGCCATGATAACTATGATCAACTAGTCAAAATTGCAAAGGTACTTGGGACAGATGAATTGAATGCATATCTGAACAAGTATCGCATAGAGTTGGACCCACATCTTGCCGCACTTGTTGGGAGGCATAGCCGGAAGCCGTGGGTAAAGTTTATTAATGCAGACAATCAACACTTGGCCGTTCCTGAGGCTGTTGACTTTCTTGACAAGTTACTGCAGTATGATCACCAAGACCGGCCCACTGCTAGAGATGCAATGGCCCATCCTTACTTCAATCCAGTCAGAAATGCAGAAAGCAGTATAACTCGTATGCAGTGA 1296 0.446 MAQFLAPLLSEVRTIDLFFFGNNSWFSSYLWRYKLEPSHHSCSSIVGFRDFAASAATPLSRPHHYHPPAQPHHSHLRPLSQPDTLAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRFYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPHLAALVGRHSRKPWVKFINADNQHLAVPEAVDFLDKLLQYDHQDRPTARDAMAHPYFNPVRNAESSITRMQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1695 431 PANTHER CASEIN KINASE II SUBUNIT ALPHA 86 427 IPR045216 GO:0004674|GO:0006468
Glsi05g1695 431 Gene3D Phosphorylase Kinase; domain 1 185 208 - -
Glsi05g1695 431 Gene3D Phosphorylase Kinase; domain 1 123 181 - -
Glsi05g1695 431 SUPERFAMILY Protein kinase-like (PK-like) 103 421 IPR011009 -
Glsi05g1695 431 FunFam Casein kinase II subunit alpha 118 208 - -
Glsi05g1695 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Glsi05g1695 431 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Glsi05g1695 431 ProSiteProfiles Protein kinase domain profile. 132 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1695 431 MobiDBLite consensus disorder prediction 59 79 - -
Glsi05g1695 431 SMART serkin_6 132 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1695 431 Pfam Protein kinase domain 132 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1695 431 FunFam Casein kinase II subunit alpha 209 420 - -
Glsi05g1695 431 Gene3D Transferase(Phosphotransferase) domain 1 209 418 - -
Glsi05g1695 431 CDD STKc_CK2_alpha 113 417 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1695 Glsi-ChrGlsi05 64945946 64955108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1695 130 418 Core Cell Cycle Gene Families AT1G76540 31.210 4.67e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Glsi05g1695 Pkinase 3.1e-66 CL0016