Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1681 ATGATATGTGCGCATGAACCAGTAGTACTCCTCCGCTTCTCGCTAGTGTGCACCCTCATCGCGTTGCGCGCGCCGCTTGCGCACCCTCCTAAGGTGCGCATCCCCTTTCTCCCTATCTCACCCATCGATACTATCACCACCACTGCCATCGTCGACCACCGCACCAAACCCATTTACCGTAACGACGAGATCTCGGATTCCAATTGCCCAGCTATGTCGAAGGCGCGTGTATACACGGATGTCAATGTCCTTCGCCCCAAGGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGGGATCAAGATGATTATGAGGTTGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAAGTGTTTGAAGGCATCAACGTTAATACTAATGAGCGCTGTATAATTAAGATTCTAAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGCGGAGGCCCAAATATCGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCAAAAACCCCCAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCGACCTTGACTGATTATGACATACGCTATTACATATACGAGCTCCTCAAGGCCTTGGATTACTGTCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGATCATGAATTGCGAAAACTTCGCTTGATAGATTGGGGGCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCCTCAAGGTACTTTAAGGGGCCTGAACTGCTAGTTGATTTGCAAGATTACGACTACTCATTAGACATGTGGAGCCTCGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCGTTCTTTTATGGGCATGACAACCATGATCAGCTTGTCAAGATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAACTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAGCCCTGGTCTAAATTTATTAACGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACTGCAAAGGAGGCAATGGCACATCCGTATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAATAA 1215 0.4461 MICAHEPVVLLRFSLVCTLIALRAPLAHPPKVRIPFLPISPIDTITTTAIVDHRTKPIYRNDEISDSNCPAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRTQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1681 404 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Glsi05g1681 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA 65 400 IPR045216 GO:0004674|GO:0006468
Glsi05g1681 404 FunFam Casein kinase II subunit alpha 91 181 - -
Glsi05g1681 404 SMART serkin_6 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1681 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Glsi05g1681 404 Pfam Protein kinase domain 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1681 404 CDD STKc_CK2_alpha 86 390 IPR045216 GO:0004674|GO:0006468
Glsi05g1681 404 SUPERFAMILY Protein kinase-like (PK-like) 77 394 IPR011009 -
Glsi05g1681 404 Gene3D Transferase(Phosphotransferase) domain 1 182 390 - -
Glsi05g1681 404 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Glsi05g1681 404 ProSiteProfiles Protein kinase domain profile. 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1681 404 FunFam Casein kinase II subunit alpha 182 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1681 Glsi-ChrGlsi05 64879013 64884321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1681 103 390 Core Cell Cycle Gene Families AT1G76540 29.773 7.65e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Glsi05g1681 Pkinase 4.3e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1681 05 64879013 64884321 Glsi09g0393 09 2694927 2698951 CCT
Glsi05g1681 05 64879013 64884321 Glsi05g1681 05 64879013 64884321 ECH