Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1664 ATGCCTCCCCAAGATCACGAGCTACCGCTGTTACTGGACTCTTGCCATGAGCCACAAGAAACCGCTTATGATTCCTCTGAGCAAGTCGTGATCGTTGGAATCGACGAGGCTGACAGTGACAACTGGGCTCGGGTGCCGCCGTTCTCATGGAAGAAGCTCTGGCTCTTCACTGGCCCAGGTTTTCTTATGAGCATTGCCTTTCTCGATCCTGGGAACCTGGAGGGAGATCTTCAGTCGGGTGCAATTGCTGGGTACTCGCTGTTGTGGCTGCTCATGTGGGCTACAGCTGTGGGGCTTCTCGTTCAGCTTTTGTCAGCACGGCTCGGTGTGGTGACTGGGAGGCATCTGGCTGAACTGTGCAGAGAGGAGTACCCAACATGGTCGAGGATGATTCTGTGGGTGATGGCGGAGTTGGCTTTGATTGGTTCTGATATACAAGAGGTTATTGGGAGCGCTATCGCTATCAGAATTCTAAGTAATGGAATTGTACCCGTTTGGGCAGGGGTTATCATTACAGCCTGTGATTGTTTCATTTTTCTATTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTCATTGGTGTAATGGCACTCTCATTTGCGTGGATGTTTGGTGAAGCAAAGCCCAACGGCAAAGATCTTCTTCTTGGTATTTTGGTTCCGAAACTTAGCTCCAAAACAATACAGCAGGCAGTCGGAATTGTGGGTTGCATTATTATGCCTCACAATGTATTCTTACACTCTGCTCTTGTTCAATCAAGACAGGTTGACCAAAGCCAAAAAGCCCGAGTTCAAGAGGCACTTAATTATTATTCTATAGAGTCAACTGCTGCCCTTATAGTCTCCTTTGTCATCAATGTATTTGTCACAACTGTGTTTGCTAAGGGTTTTTATGGAACTGAATTAGCAAACAGCGTTGGTCTTGGGAACGCTGGGCAGTATCTTGAGGAGAAGTATGGGGGTGGGCTTCTTCCAATCTTATATATCTGGGGTGTAGGGTTATTAGCAGCCGGACAAAGTAGCACTATAACTGGGACTTATGCTGGACAATTTATCATGGGGGGTTTTCTAAATTTAAGACTGAAAAAATGGATGAGGCCATTAATTACACGAAGTTGTGCAATCATCCCGACCGTGATAGTTGCTCTTGTTTTTGAAACCTCAGAGGATTCATTAGATGTTCTAAATCAATGGCTTAATGTTCTCCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTTTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATCGGCCCTGTCCTCAAGATTGTTGCATGGATTGTGGCTGCTCTGGTGATTGTGATCAATGGCTATCTTATGCTGGAATTCTTCACCTCTGAAGTGACTGGAGCAGTGTTTGGTGCTGTAATGTTTGCATTTACGGCTGCCTATGTTGCATTTATACTCTACCTTGTTTCTCAGGCCATCACCTGTTTACCTTGGCAAAGTTTAACACAATCAAAGACAATTTCTAGCACAGAGAATTGA 1539 0.4516 MPPQDHELPLLLDSCHEPQETAYDSSEQVVIVGIDEADSDNWARVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAVGLLVQLLSARLGVVTGRHLAELCREEYPTWSRMILWVMAELALIGSDIQEVIGSAIAIRILSNGIVPVWAGVIITACDCFIFLFLENYGVRKLEAFFAVLIGVMALSFAWMFGEAKPNGKDLLLGILVPKLSSKTIQQAVGIVGCIIMPHNVFLHSALVQSRQVDQSQKARVQEALNYYSIESTAALIVSFVINVFVTTVFAKGFYGTELANSVGLGNAGQYLEEKYGGGLLPILYIWGVGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRPLITRSCAIIPTVIVALVFETSEDSLDVLNQWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGPVLKIVAWIVAALVIVINGYLMLEFFTSEVTGAVFGAVMFAFTAAYVAFILYLVSQAITCLPWQSLTQSKTISSTEN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 236 259 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 371 388 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 343 362 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 132 158 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PRINTS Natural resistance-associated macrophage protein signature 405 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 Hamap Divalent metal cation transporter MntH [mntH]. 39 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 NCBIfam Nramp family divalent metal transporter 58 427 - -
Glsi05g1664 512 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 51 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 Pfam Natural resistance-associated macrophage protein 74 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi05g1664 512 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 44 491 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1664 Glsi-ChrGlsi05 64775886 64778862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1664 1 505 Inorganic Solute Cotransporters AT2G23150 74.016 0.0 778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1664 05 64775886 64778862 Glsi09g0408 09 2793593 2797281 CCT
Glsi05g1664 05 64775886 64778862 Glsi05g1664 05 64775886 64778862 ECH