Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1649 ATGGAAACCATTCCAAATTTAATCTCCTCTACCCAATTCCAGTCACTTCTATTTTGCCAAAGAGTTAAGAGTATTCGATTCTCCAAACCCATTCAACACCAACCCTCCCTATCTTCTTCGATTTCATTCACCCCCTTTTCTTCTCACAAATTTCTAAGTCTCCATCCCCACCGGCTATCTTGTGTCGCTGAATCCAGCAGTGACCACCACCACGGCGATCAAACCCACCGCGACCATCACGGCCACCATCACCATCACTTACATGGCAATGATTGTGCGAATCTTACTGGACCTCAAAGAGCGATTCTTGGGTTCGCCAAAGCCACCAGATGGATAGACTTGGCAGATTTCTTAAGGGAGCATTTGCAATTATGTTGCTGTTCAACGGCTTTATTCGTCGCTGCTGCCATTTGCCCTCATGCCTTGCCAAAACCCGTCGTCAAACCTTTTCAAAATGCTCTCATTTGCATTGCTTTTCCTTTAGTTGGGGTTTCTGCATCACTCGATGCTCTGATAGAAATCAGCAGTGGAAAAGTAAACATCCATGTGTTGATGGCTATGGCAGCCTTCGCATCAGTATTTATGGGGAACTCTTTGGAGGGAGGATTACTTCTTGCCATGTTTAATCTGGCACATATAGCTGAGGAGTACTTCACCAGTCGTTCAATGGTTGACGTTAAAGAGTTAAAGGACAATAATCCAGATTTTGCCCTTGTACTGGATGCTAGTGATGATGAACTTCCTAATACCTTTGACTTGGCGTACAAGAGGGTCCCTGTGCATGATGTAACAGTAGGTTCATATATCTTGGTTGGAGCTGGCGAGTCTGTGCCTGTAGATTGTGAACTTTTCCAAGGCAGTGCCACAATTACCATTGAGCACCTGACAGGAGAAGTTAAACCTTTGGAGGCCAAAGTTGGAGATAGAATTCCTGGTGGTGCAAGGAATTTAGATGGAAGAATAATTATAAAGGCAACAAAGACTTGGAAGGAATCAACTCTTAGTAGAATTGTGCAGTTAACTGAAGAAGCACAGTTAAATAAACCAAAGCTTCAAAGGTGGCTGGATGAATTTGGTGAGCAATACAGCAAAGTTGTTATGGTGTTATCAGTTGCTATTGCTGTCATTGGGCCACTCATATTTAAATGGCCGTTCATTAGCACATCAGCTTGCAGAGGTTCAGTATACAGAGCCCTGGGGCTCATGGTGGCTGCATCACCATGTGCCTTGGCTGTTGCTCCATTGGCATATGCTATAGCAATCAGCTCCTGTGCAAGAAAGGGGATATTGCTAAAAGGTGGACATGTTCTGGATGCTCTAGCTTCATGCCGCACAATTGCATTTGACAAAACAGGGACATTAACGACTGGTGGACTTGTATTCAAGGCAATTGAACCAATTTATGGTCATCAGGTTAGAACCAACATATCAAAAATTTCTTCCTGTTGCATTCCGAGCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCTGCCATGGAAAAGGGTACTACTCACCCCATTGGAAGGGCTGTTGTTGATCACAGCGTGGGGAAAGACCTCCCTTCTGTCTCTGTTGAGAGTTTTGAGTATTTTCCTGGTAGAGGCCTTATTGCGACTCTCAACAGCATTGAGTCAGGAACGGGAGGAGCTAAACTATTAAAAGCGTCACTTGGATCTGTTGATTTCATCACTTCGATTTGTCAATCTGAAGTCGACTCAAAAAGGATCAAAGAAGCTGTTAATGCATCTTCTTATGGGAGTGAATATGTTCATGCTGCCCTTTCAGTTAACCAAAAGGTAACACTGATTCATCTAGAGGATAGGCCTCGGCCTGGGGTTTCTAATGTCATACAGGAATTGCAAGATCAAGCAAAGTTTCGTGTGATGATGCTAACTGGTGACCACGGGTCTAGTGCAAGGAGAGTCGCATGTGCTGTGGGCATCAATGAGGTTTATTGCAGTCTGAAGCCTGAAGATAAGCTGAGTCATGTAAAGGACATCTCAAGGGATATGGGTGGAGGCCTAATCATGGTTGGTGAAGGTATCAATGATGCCCCAGCACTTGCTGCTGCAACTGTAGGGATTGTGCTGGCTCAACGTGCAAGTGCAACTGCCATAGCTGTTGCAGATGTGTTGTTGCTTCGGGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATCAAACAAAACGTGGCCCTAGCATTGTCCTGCATTGTCATGGCTTCTCTTCCATCAGTATTGGGATTTTTGCCCCTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTCCTTGTTTGTCTCAATTCCATTCGTGCTTTAAATGAACCAGCTTGGTCCTGGAACCAGGATATACTACATTTGATTAACCAAATTAAATCTAGACTTCTCTCACTCGGGACAAATAAAACCAGCTCCAACGCCTTCAACATCGCAAATTTGTAA 2466 0.4424 METIPNLISSTQFQSLLFCQRVKSIRFSKPIQHQPSLSSSISFTPFSSHKFLSLHPHRLSCVAESSSDHHHGDQTHRDHHGHHHHHLHGNDCANLTGPQRAILGFAKATRWIDLADFLREHLQLCCCSTALFVAAAICPHALPKPVVKPFQNALICIAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASVFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKDNNPDFALVLDASDDELPNTFDLAYKRVPVHDVTVGSYILVGAGESVPVDCELFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIIKATKTWKESTLSRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVMVLSVAIAVIGPLIFKWPFISTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALASCRTIAFDKTGTLTTGGLVFKAIEPIYGHQVRTNISKISSCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSVSVESFEYFPGRGLIATLNSIESGTGGAKLLKASLGSVDFITSICQSEVDSKRIKEAVNASSYGSEYVHAALSVNQKVTLIHLEDRPRPGVSNVIQELQDQAKFRVMMLTGDHGSSARRVACAVGINEVYCSLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSCIVMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNEPAWSWNQDILHLINQIKSRLLSLGTNKTSSNAFNIANL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1649 821 Gene3D - 440 728 IPR023214 -
Glsi05g1649 821 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Glsi05g1649 821 NCBIfam HAD-IC family P-type ATPase 581 757 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1649 821 NCBIfam HAD-IC family P-type ATPase 254 473 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g1649 821 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Glsi05g1649 821 PRINTS P-type cation-transporting ATPase superfamily signature 623 633 - -
Glsi05g1649 821 PRINTS P-type cation-transporting ATPase superfamily signature 600 611 - -
Glsi05g1649 821 PRINTS P-type cation-transporting ATPase superfamily signature 701 713 - -
Glsi05g1649 821 PRINTS P-type cation-transporting ATPase superfamily signature 677 696 - -
Glsi05g1649 821 Pfam E1-E2 ATPase 255 427 - -
Glsi05g1649 821 CDD P-type_ATPase_HM 125 779 - -
Glsi05g1649 821 SFLD C1.7: P-type atpase like 429 730 - -
Glsi05g1649 821 Gene3D - 458 608 IPR023299 GO:0000166
Glsi05g1649 821 NCBIfam heavy metal translocating P-type ATPase 181 779 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi05g1649 821 SUPERFAMILY HAD-like 445 777 IPR036412 -
Glsi05g1649 821 Pfam haloacid dehalogenase-like hydrolase 444 690 - -
Glsi05g1649 821 MobiDBLite consensus disorder prediction 65 90 - -
Glsi05g1649 821 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 28 817 - -
Glsi05g1649 821 SFLD p-type atpase 429 730 IPR044492 -
Glsi05g1649 821 Gene3D - 219 345 - -
Glsi05g1649 821 SUPERFAMILY Calcium ATPase, transmembrane domain M 183 760 IPR023298 -
Glsi05g1649 821 SUPERFAMILY Calcium ATPase, transduction domain A 255 340 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1649 Glsi-ChrGlsi05 64671523 64679889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1649 98 802 Primary Pumps ATPases AT4G37270 77.021 0.0 1106