LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g1647	ATGAATACCGCAGTAACCAGGAAGGACATGGATCGGATCAAGGGCCCGTGGAGCCCGGAAGAGGACGAGGCGTTGCAGAAGCTTGTAGAGAAGCATGGCCCCAGGAATTGGTCCCTGATCAGCAAGTCCATTCCTGGTCGATCGGGCAAGTCTTGCAGGCTTCGTTGGTGTAATCAGCTCTCTCCTCAAGTCGAGCATCGGGCCTTCACCCCTGAAGAGGATGAGACTATAATCAGGGCTCATGCTCGTTTCGGCAACAAGTGGGCTACCATCGCACGCCTTCTCTCTGGCCGAACGGATAACGCCATCAAAAACCACTGGAACTCCACCTTGAAGCGCAAGTGTTCTTCCATGATGATCGATGAAGTTGGTGCTGCCGGTGGGTTCGATGGCAGTTTTAGCCCCCAGCCACTGAAGAGGTCGGTGAGTGCTGGTGCTGCTGTGCCGGTGTCCACTGGGCTCTACATGAACCCTCCCTCCCCCGGTAGCCCTTCCGGATCGGATGTCAGCGATTCCAGTGTTCCCGTTGCGTCTTCTTCCCATGTATACCGACCTGTGCCAAGAACCGGCGGAGTTCTACCTCTCGTAGAAACGACGTCGTCTTCCAATGATCCTACCACGTCATTATCCCTGTCTCTTCCAGGCGTCGACTCCTCTGAAGTCTCAAATCGGCCTACAGAGCTAACTCATGTAGCGCTACTGACAAATACTATGCCTTTATTGTCCGTAATGGCCACGGCGCCTGCGCCGTCTCAATCTACAGCTCCACCTCCGACTCCTGCAGTGGCTCCGATGTCGGTGCCGCAGCAGGGTAGGGATGATCGGAACGGTGAGGTAGGTCCAGCGCCGGCGAATCAGAATGGGTTCTTAGCATTCAATTTCAGTGCAGAGTTGCTAGCTGTGATGCAGGATATGATAAGGAAGGAGGTGAGAAGTTATATGGCGGGAATGGAGCAGCAGAATGGGATGTGCTTTCAGGCAGCTAATGGATTTAAGAACGCTTCGGTGAAGCATATTGGGATTAGCAGGATCGATTCCTGA	1041	0.5408	MNTAVTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMMIDEVGAAGGFDGSFSPQPLKRSVSAGAAVPVSTGLYMNPPSPGSPSGSDVSDSSVPVASSSHVYRPVPRTGGVLPLVETTSSSNDPTTSLSLSLPGVDSSEVSNRPTELTHVALLTNTMPLLSVMATAPAPSQSTAPPPTPAVAPMSVPQQGRDDRNGEVGPAPANQNGFLAFNFSAELLAVMQDMIRKEVRSYMAGMEQQNGMCFQAANGFKNASVKHIGISRIDS	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g1647	346	ProSiteProfiles	Myb-like domain profile.	9	60	IPR001005	-
	Glsi05g1647	346	Gene3D	-	13	65	-	-
	Glsi05g1647	346	CDD	SANT	68	111	IPR001005	-
	Glsi05g1647	346	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Glsi05g1647	346	MobiDBLite	consensus disorder prediction	247	284	-	-
	Glsi05g1647	346	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	115	IPR017930	-
	Glsi05g1647	346	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	64	IPR017930	-
	Glsi05g1647	346	Gene3D	-	67	123	-	-
	Glsi05g1647	346	MobiDBLite	consensus disorder prediction	156	179	-	-
	Glsi05g1647	346	FunFam	MYB transcription factor	14	65	-	-
	Glsi05g1647	346	MobiDBLite	consensus disorder prediction	155	224	-	-
	Glsi05g1647	346	FunFam	Transcription factor MYB44	68	114	-	-
	Glsi05g1647	346	MobiDBLite	consensus disorder prediction	194	224	-	-
	Glsi05g1647	346	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Glsi05g1647	346	PANTHER	MYB PROTEIN-RELATED	14	224	-	-
	Glsi05g1647	346	CDD	SANT	16	58	IPR001005	-
	Glsi05g1647	346	SMART	sant	13	62	IPR001005	-
	Glsi05g1647	346	SMART	sant	65	113	IPR001005	-
	Glsi05g1647	346	Pfam	Myb-like DNA-binding domain	17	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g1647	Glsi-ChrGlsi05	64669455	64670495	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g1647	6	345	MYB Transcription Factor Family	AT4G37260	50.279	6.61e-105	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi05g1647		Myb_DNA-bind_6	5.8e-18	CL0123