Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1640 ATGAAGATGGCTCTCAGGGAAGAAGCCCAAGATTTGCAAGACTCTTCGTTATTCCTTGATGCGCTCCTCTGTGAGGAAGATAGTTTTGAGGAAGATTCTGGTGAGAATGGTACTGAGGGAGACAGTGATAACTATAATTCAACCGTTAGAAAGCCTTCATCTCTACCTTTGATTTTGTTCGACAGTGACTTGTTTTGGGAGGACGATGAGCTTCTCTCCCTAATCTCAAAAGAGGGTGGGACTCATTTCGGTTCCAGTAATCTAATTGCTGATGGGCCTCTAGAGGGAGCTCGCGATGAGGCTGTGCACTGGATTTCCAAAGTTTGTGCGCACTATGGTTTCTCTGCTTTGACCACTGTTCTTGCTGTGAACTACTTCGATAGGTTCATCACAAGCCTAAGATTTCAGAGGGATATGCCATGGATGACACAGCTTACTGCAGTTGCCTGTTTATCTCTGGCTGCAAAAATGGAGGAGACCCAAGTGCCACTTCTTTTAGACTTCCAAGTGGAGGAATCAAAGTACGTTTTTGAAGCAAAGACTATACAGAGAATGGAGCTTTTAGTGTTATCCACTCTTAAATGGAGGATGAATCCGGTGACCCCCATCTCTTTCTTTGAACACATTGTCAGAAGGCTGGGTTTAAAGAGCCGCTTGCATTGGGAATTCTTGTTTCGGTGCGAGCGTGTTCTTCTCTCTGTCGTTGCGGATTCAAGGGTTATGAGCTATCTTCCTTCTACATTAGCTGTTGCTACAATGATCCACGTTATTAGAGAGATTGAACCATTTAATGCAATGAAACACAGAAATCAGCTTCTGAGTTTACTCAAAATCAATGAGGAACAAGTGAACGACTGCTACCAACTCATACTAAAACTACTTTGCTGCCATGAAGACATTCAAAATCTGAACCAGAAACGCAAGCGCCTGTCTGAACCGAGTAGCCCAGATGGTGTGATTGATGCATCTTTCAGCTGTGATGGCTCAAATGATTCGTGGATCATGGCATCATCAATCTCATTTTCACTGGAGCCAATGTATAAGAGGGGCAGATCTCTGGACCAGCAGATGCAATTGCCTTCCTTGAATCGTGTGTCTATTGATGTTCTTCACAGCCCTCGTTAA 1125 0.44 MKMALREEAQDLQDSSLFLDALLCEEDSFEEDSGENGTEGDSDNYNSTVRKPSSLPLILFDSDLFWEDDELLSLISKEGGTHFGSSNLIADGPLEGARDEAVHWISKVCAHYGFSALTTVLAVNYFDRFITSLRFQRDMPWMTQLTAVACLSLAAKMEETQVPLLLDFQVEESKYVFEAKTIQRMELLVLSTLKWRMNPVTPISFFEHIVRRLGLKSRLHWEFLFRCERVLLSVVADSRVMSYLPSTLAVATMIHVIREIEPFNAMKHRNQLLSLLKINEEQVNDCYQLILKLLCCHEDIQNLNQKRKRLSEPSSPDGVIDASFSCDGSNDSWIMASSISFSLEPMYKRGRSLDQQMQLPSLNRVSIDVLHSPR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1640 374 Gene3D - 96 198 - -
Glsi05g1640 374 CDD CYCLIN_AtCycD-like_rpt1 97 195 - -
Glsi05g1640 374 CDD CYCLIN_AtCycD-like_rpt2 200 290 - -
Glsi05g1640 374 MobiDBLite consensus disorder prediction 29 48 - -
Glsi05g1640 374 SUPERFAMILY Cyclin-like 68 198 IPR036915 -
Glsi05g1640 374 FunFam CYCLIN D32 199 288 - -
Glsi05g1640 374 Pfam Cyclin, C-terminal domain 200 306 IPR004367 -
Glsi05g1640 374 Gene3D - 199 288 - -
Glsi05g1640 374 Pfam Cyclin, N-terminal domain 96 198 IPR006671 -
Glsi05g1640 374 SMART cyclin_7 103 191 IPR013763 -
Glsi05g1640 374 PANTHER CYCLINS 89 292 IPR039361 -
Glsi05g1640 374 FunFam D3-type cyclin 91 198 - -
Glsi05g1640 374 SUPERFAMILY Cyclin-like 201 300 IPR036915 -
Glsi05g1640 374 SMART Cyclin_C_2 200 327 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1640 Glsi-ChrGlsi05 64635268 64636743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1640 3 364 Core Cell Cycle Gene Families AT5G67260 50.269 5.63e-111 328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0423 09 2910568 2912017 Glsi05g1640 05 64635268 64636743 CCT
Glsi05g1640 05 64635268 64636743 Glsi09g0423 09 2910568 2912017 ECH
Glsi10g0375 10 2441707 2443038 Glsi05g1640 05 64635268 64636743 ECH
Glsi05g1640 05 64635268 64636743 Glsi05g1640 05 64635268 64636743 ECH