Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1632 ATGGCTGTGGAGCTCGTGATGGGTTACGGGAATGATAATTTCGGAGCCAAAGTGGAAGATAATGCTGTTCAAGAAGCTGCATCTGGGTTAGAGAGCGTCGAGAAGCTCATCATGTTGCTTTCTCAGAGCCAGCAACAATACCAGTCGTCTTCAACTTCGAAGTCCTCCATGGAAATTGAGATGGACTGTAAAGCTGTCGCGGACGTCGCTGTTTCCAAGTTTAAGAAGGTAATTTCACTTCTGGGTCGAACCAGAACCGGCCATGCTCGCTTTAGAAGAGCCCCTTTGGCTCCCCCTCCCCTCAGCCAAAATCCAGAACCGCAACCTTCTGAACCCAAAGTCTATCATGCAACGCCGTTACAGCAGATCCCACCGGCTCTTCTTCAACACCAAACTCACAGCGACCACCCTTTGATCCCAAAGAATGGGATGATTGAGAGGAAGGACTCGGTCAAGACCATTAATTTTTCGTATGCCTCTGCCGCGACTTCATTTATATCGTCACTTACCGGCGATACTGATTGTAAACAACCCTCGTCCTCTTCGCCGGCTACGGCTTTTCAGATCACGAATCTGTGCCAGGTCTCGTCAGCAGGAAAACCTCCGCTTTCTTCGTCTTCATTGAAGAGGAAGTGTAGCTCTGAAAACTTGGGTTCCGGCAAGTGCGGCAGTTCCTCTGGTCGCTGCCATTGTTCAAAAAAGAGAAAAATGAGGTTGAAAAGGGTAGTGAGGGTGCCAGCAATAAGCTTGAAGATGTCTGATATTCCACCTGATGATTATTCTTGGAGGAAGTACGGACAGAAACCCATTAAAGGGTCCCCTCATCCAAGGGGTTACTACAAGTGCAGCAGCGTCAGAGGGTGTCCAGCGCGCAAACACGTAGAGCGAGCTCTAGATGACCCAGCTATGCTAGTAGTCACGTACGAAGGCGAACACAATCACTCGCTCTCGGCGGGCGAAGCTACGAATCTCATCCTAGAATCATCTTAG 990 0.4949 MAVELVMGYGNDNFGAKVEDNAVQEAASGLESVEKLIMLLSQSQQQYQSSSTSKSSMEIEMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRAPLAPPPLSQNPEPQPSEPKVYHATPLQQIPPALLQHQTHSDHPLIPKNGMIERKDSVKTINFSYASAATSFISSLTGDTDCKQPSSSSPATAFQITNLCQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSGRCHCSKKRKMRLKRVVRVPAISLKMSDIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHSLSAGEATNLILESS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1632 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 320 IPR044810 GO:0003700
Glsi05g1632 329 SMART WRKY_cls 256 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi05g1632 329 MobiDBLite consensus disorder prediction 89 114 - -
Glsi05g1632 329 FunFam WRKY transcription factor 65 240 317 - -
Glsi05g1632 329 Gene3D WRKY domain 242 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi05g1632 329 Pfam WRKY DNA -binding domain 258 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi05g1632 329 SUPERFAMILY WRKY DNA-binding domain 254 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi05g1632 329 ProSiteProfiles WRKY domain profile. 251 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi05g1632 329 Pfam Plant zinc cluster domain 209 254 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1632 Glsi-ChrGlsi05 64603250 64604642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1632 17 314 WRKY Transcription Factor Family AT2G24570 46.417 6.12e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi05g1632 WRKY 4.3e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0432 09 2955607 2959490 Glsi05g1632 05 64603250 64604642 CCT
Glsi05g1632 05 64603250 64604642 Glsi05g1632 05 64603250 64604642 ECH